Analysis of interatomic Contacts of Structural Units in PDB entry:
8GY3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GY3 entry

There are 3 chains in PDB entry 8GY3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 5HIS 444
B
 MET 1GLY 154
C
 ALA 40SER 771
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 8GY3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 25Right-handed alpha
Helix 2
AA2
A
41 55Right-handed alpha
Helix 3
AA3
A
102 113Right-handed alpha
Helix 4
AA4
A
126 131Right-handed alpha
Helix 5
AA5
A
134 147Right-handed alpha
Helix 6
AA6
A
166 178Right-handed alpha
Helix 7
AA7
A
191 202Right-handed alpha
Helix 8
AA8
A
207 212Right-handed alpha
Helix 9
AA9
A
221 225Right-handed 310
Helix 10
AB1
A
250 261Right-handed alpha
Helix 11
AB2
A
270 273Right-handed 310
Helix 12
AB3
A
274 279Right-handed alpha
Helix 13
AB4
A
280 284Right-handed 310
Helix 14
AB5
A
285 301Right-handed alpha
Helix 15
AB6
A
301 306Right-handed alpha
Helix 16
AB7
A
308 321Right-handed alpha
Helix 17
AB8
A
331 341Right-handed alpha
Helix 18
AB9
A
362 367Right-handed alpha
Helix 19
AC1
A
370 380Right-handed alpha
Helix 20
AC2
A
400 416Right-handed alpha
Helix 21
AC3
A
423 433Right-handed alpha
Helix 22
AC4
B
21 28Right-handed alpha
Helix 23
AC5
B
62 67Right-handed 310
Helix 24
AC6
B
73 77Right-handed 310
Helix 25
AC7
B
83 92Right-handed alpha
Helix 26
AC8
B
100 115Right-handed alpha
Helix 27
AC9
B
119 128Right-handed alpha
Helix 28
AD1
B
136 154Right-handed alpha
Helix 29
AD2
C
80 94Right-handed alpha
Helix 30
AD3
C
96 98Right-handed 310
Helix 31
AD4
C
121 150Right-handed alpha
Helix 32
AD5
C
172 180Right-handed alpha
Helix 33
AD6
C
186 191Right-handed alpha
Helix 34
AD7
C
212 218Right-handed alpha
Helix 35
AD8
C
223 227Right-handed 310
Helix 36
AD9
C
255 259Right-handed 310
Helix 37
AE1
C
285 296Right-handed alpha
Helix 38
AE2
C
309 323Right-handed alpha
Helix 39
AE3
C
335 342Right-handed alpha
Helix 40
AE4
C
343 345Right-handed 310
Helix 41
AE5
C
384 397Right-handed alpha
Helix 42
AE6
C
399 401Right-handed 310
Helix 43
AE7
C
422 433Right-handed alpha
Helix 44
AE8
C
443 451Right-handed alpha
Helix 45
AE9
C
483 489Right-handed alpha
Helix 46
AF1
C
490 493Right-handed 310
Helix 47
AF2
C
503 507Right-handed 310
Helix 48
AF3
C
526 533Right-handed alpha
Helix 49
AF4
C
545 561Right-handed alpha
Helix 50
AF5
C
564 572Right-handed alpha
Helix 51
AF6
C
576 581Right-handed 310
Helix 52
AF7
C
589 604Right-handed alpha
Helix 53
AF8
C
664 685Right-handed alpha
Helix 54
AF9
C
707 711Right-handed 310
Helix 55
AG1
C
731 748Right-handed alpha
Helix 56
AG2
C
758 771Right-handed alpha
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There are 11 sheets in PDB entry 8GY3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
83 86anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 231first strand
Strand 2
A
234 236anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 15first strand
Strand 2
B
2 7anti-parallel
Strand 3
B
70 72parallel
Strand 4
B
48 51anti-parallel
Strand 5
B
54 57anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 62first strand
Strand 2
C
68 72anti-parallel
Strand 3
C
100 104parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
157 159first strand
Strand 2
C
162 165anti-parallel
Strand 3
C
168 171anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
262 267first strand
Strand 2
C
279 283anti-parallel
Strand 3
C
233 238anti-parallel
Strand 4
C
438 441parallel
Strand 5
C
366 371anti-parallel
Strand 6
C
376 380anti-parallel
Strand 7
C
403 407parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
247 252first strand
Strand 2
C
297 301anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
328 332first strand
Strand 2
C
519 525anti-parallel
Strand 3
C
472 481parallel
Strand 4
C
457 465anti-parallel
Strand 5
C
347 354anti-parallel
Strand 6
C
754 755parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
494 495first strand
Strand 2
C
501 502anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
615 624first strand
Strand 2
C
630 641anti-parallel
Strand 3
C
648 658anti-parallel
Strand 4
C
714 718parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
690 691first strand
Strand 2
C
694 695anti-parallel
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