Analysis of interatomic Contacts of Structural Units in PDB entry:
8GY6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GY6 entry

There are 4 chains in PDB entry 8GY6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 31GLN 932
B
 ASP 78ALA 191
C
 LYS 2SER 57
D
 THR 84ILE 132
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 8GY6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
77 90Right-handed alpha
Helix 2
AA2
A
123 133Right-handed alpha
Helix 3
AA3
A
139 149Right-handed alpha
Helix 4
AA4
A
153 157Right-handed 310
Helix 5
AA5
A
170 177Right-handed alpha
Helix 6
AA6
A
178 198Right-handed alpha
Helix 7
AA7
A
234 241Right-handed alpha
Helix 8
AA8
A
242 245Right-handed 310
Helix 9
AA9
A
249 256Right-handed 310
Helix 10
AB1
A
275 287Right-handed alpha
Helix 11
AB2
A
297 301Right-handed 310
Helix 12
AB3
A
306 318Right-handed alpha
Helix 13
AB4
A
322 326Right-handed 310
Helix 14
AB5
A
367 376Right-handed alpha
Helix 15
AB6
A
378 383Right-handed alpha
Helix 16
AB7
A
416 426Right-handed alpha
Helix 17
AB8
A
448 454Right-handed alpha
Helix 18
AB9
A
455 459Right-handed 310
Helix 19
AC1
A
468 480Right-handed alpha
Helix 20
AC2
A
503 508Right-handed alpha
Helix 21
AC3
A
511 519Right-handed alpha
Helix 22
AC4
A
520 534Right-handed alpha
Helix 23
AC5
A
561 580Right-handed alpha
Helix 24
AC6
A
596 606Right-handed alpha
Helix 25
AC7
A
621 626Right-handed alpha
Helix 26
AC8
A
628 638Right-handed alpha
Helix 27
AC9
A
639 643Right-handed 310
Helix 28
AD1
A
647 662Right-handed alpha
Helix 29
AD2
A
686 709Right-handed alpha
Helix 30
AD3
A
720 732Right-handed alpha
Helix 31
AD4
A
738 752Right-handed alpha
Helix 32
AD5
A
767 774Right-handed alpha
Helix 33
AD6
A
780 791Right-handed alpha
Helix 34
AD7
A
795 799Right-handed 310
Helix 35
AD8
A
833 842Right-handed alpha
Helix 36
AD9
A
852 871Right-handed alpha
Helix 37
AE1
A
874 895Right-handed alpha
Helix 38
AE2
A
917 924Right-handed alpha
Helix 39
AE3
B
79 99Right-handed alpha
Helix 40
AE4
B
101 108Right-handed alpha
Helix 41
AE5
B
119 125Right-handed alpha
Helix 42
AE6
B
134 141Right-handed alpha
Helix 43
AE7
B
168 172Right-handed 310
Helix 44
AE8
B
176 180Right-handed 310
Helix 45
AE9
C
3 20Right-handed alpha
Helix 46
AF1
C
26 41Right-handed alpha
Helix 47
AF2
C
44 57Right-handed alpha
Helix 48
AF3
D
85 96Right-handed alpha
Helix 49
AF4
D
100 112Right-handed alpha
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There are 11 sheets in PDB entry 8GY6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
43 44anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 224first strand
Strand 2
A
201 204anti-parallel
Strand 3
A
232 233parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 355first strand
Strand 2
A
343 347anti-parallel
Strand 3
A
327 330anti-parallel
Strand 4
B
115 116anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 335first strand
Strand 2
A
338 340anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 387first strand
Strand 2
A
399 400anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
539 540first strand
Strand 2
A
666 669parallel
Strand 3
A
672 675anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
542 545first strand
Strand 2
A
555 558anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
615 616first strand
Strand 2
A
761 766anti-parallel
Strand 3
A
753 758anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
816 821first strand
Strand 2
A
826 831anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 132first strand
Strand 2
B
184 186anti-parallel
Strand 3
B
159 160anti-parallel
Strand 4
B
166 167anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 155first strand
Strand 2
B
189 190anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il