Analysis of interatomic Contacts of Structural Units in PDB entry:
8GY8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GY8 entry

There are 2 chains in PDB entry 8GY8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 375
B
 MET 1ASN 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8GY8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 8Right-handed alpha
Helix 2
AA2
A
22 24Right-handed 310
Helix 3
AA3
A
25 39Right-handed alpha
Helix 4
AA4
A
43 55Right-handed alpha
Helix 5
AA5
A
59 73Right-handed alpha
Helix 6
AA6
A
83 94Right-handed alpha
Helix 7
AA7
A
102 114Right-handed alpha
Helix 8
AA8
A
117 126Right-handed alpha
Helix 9
AA9
A
129 133Right-handed 310
Helix 10
AB1
A
142 160Right-handed alpha
Helix 11
AB2
A
172 183Right-handed alpha
Helix 12
AB3
A
199 202Right-handed 310
Helix 13
AB4
A
205 215Right-handed alpha
Helix 14
AB5
A
216 221Right-handed alpha
Helix 15
AB6
A
246 248Right-handed 310
Helix 16
AB7
A
262 277Right-handed alpha
Helix 17
AB8
A
316 329Right-handed alpha
Helix 18
AB9
A
339 343Right-handed 310
Helix 19
AC1
A
362 374Right-handed alpha
Helix 20
AC2
B
22 24Right-handed 310
Helix 21
AC3
B
25 38Right-handed alpha
Helix 22
AC4
B
43 55Right-handed alpha
Helix 23
AC5
B
59 74Right-handed alpha
Helix 24
AC6
B
83 94Right-handed alpha
Helix 25
AC7
B
99 101Right-handed 310
Helix 26
AC8
B
102 114Right-handed alpha
Helix 27
AC9
B
117 126Right-handed alpha
Helix 28
AD1
B
129 133Right-handed 310
Helix 29
AD2
B
142 160Right-handed alpha
Helix 30
AD3
B
172 183Right-handed alpha
Helix 31
AD4
B
199 202Right-handed 310
Helix 32
AD5
B
205 221Right-handed alpha
Helix 33
AD6
B
246 248Right-handed 310
Helix 34
AD7
B
262 277Right-handed alpha
Helix 35
AD8
B
316 328Right-handed alpha
Helix 36
AD9
B
339 343Right-handed 310
Helix 37
AE1
B
362 374Right-handed alpha
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There are 10 sheets in PDB entry 8GY8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
15 18anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
134 137anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 190first strand
Strand 2
A
193 197anti-parallel
Strand 3
A
162 169anti-parallel
Strand 4
A
226 234anti-parallel
Strand 5
A
237 244anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 282first strand
Strand 2
A
298 302anti-parallel
Strand 3
A
305 311anti-parallel
Strand 4
A
334 338parallel
Strand 5
A
353 355parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 289first strand
Strand 2
A
292 294anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
15 18anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 77first strand
Strand 2
B
134 137anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 190first strand
Strand 2
B
193 197anti-parallel
Strand 3
B
162 169anti-parallel
Strand 4
B
226 234anti-parallel
Strand 5
B
237 244anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
279 282first strand
Strand 2
B
298 302anti-parallel
Strand 3
B
305 311anti-parallel
Strand 4
B
334 338parallel
Strand 5
B
354 355parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 289first strand
Strand 2
B
292 294anti-parallel
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