Analysis of interatomic Contacts of Structural Units in PDB entry:
8GY9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GY9 entry

There are 2 chains in PDB entry 8GY9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 38LEU 299
B
 PRO 38SER 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8GY9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 46Right-handed 310
Helix 2
AA2
A
60 75Right-handed alpha
Helix 3
AA3
A
76 85Right-handed alpha
Helix 4
AA4
A
100 112Right-handed alpha
Helix 5
AA5
A
128 139Right-handed alpha
Helix 6
AA6
A
193 213Right-handed alpha
Helix 7
AA7
A
230 245Right-handed alpha
Helix 8
AA8
A
272 293Right-handed alpha
Helix 9
AA9
B
39 46Right-handed 310
Helix 10
AB1
B
60 75Right-handed alpha
Helix 11
AB2
B
76 83Right-handed alpha
Helix 12
AB3
B
100 112Right-handed alpha
Helix 13
AB4
B
128 139Right-handed alpha
Helix 14
AB5
B
193 213Right-handed alpha
Helix 15
AB6
B
230 245Right-handed alpha
Helix 16
AB7
B
272 293Right-handed alpha
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There are 2 sheets in PDB entry 8GY9. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 166first strand
Strand 2
A
143 147parallel
Strand 3
A
120 123parallel
Strand 4
A
179 182parallel
Strand 5
A
220 225parallel
Strand 6
A
262 268anti-parallel
Strand 7
A
246 250anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 166first strand
Strand 2
B
143 147parallel
Strand 3
B
120 123parallel
Strand 4
B
179 182parallel
Strand 5
B
220 225parallel
Strand 6
B
262 268anti-parallel
Strand 7
B
246 250anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il