Analysis of interatomic Contacts of Structural Units in PDB entry:
8GYB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GYB entry

There are 4 chains in PDB entry 8GYB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 42THR 294
B
 GLU 42LEU 299
C
 GLU 42LEU 299
D
 GLU 42ARG 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8GYB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 74Right-handed alpha
Helix 2
AA2
A
76 84Right-handed alpha
Helix 3
AA3
A
100 112Right-handed alpha
Helix 4
AA4
A
128 139Right-handed alpha
Helix 5
AA5
A
193 213Right-handed alpha
Helix 6
AA6
A
230 245Right-handed alpha
Helix 7
AA7
A
272 291Right-handed alpha
Helix 8
AA8
B
42 46Right-handed 310
Helix 9
AA9
B
60 75Right-handed alpha
Helix 10
AB1
B
76 83Right-handed alpha
Helix 11
AB2
B
100 112Right-handed alpha
Helix 12
AB3
B
128 139Right-handed alpha
Helix 13
AB4
B
193 214Right-handed alpha
Helix 14
AB5
B
230 245Right-handed alpha
Helix 15
AB6
B
272 293Right-handed alpha
Helix 16
AB7
C
60 74Right-handed alpha
Helix 17
AB8
C
76 84Right-handed alpha
Helix 18
AB9
C
100 112Right-handed alpha
Helix 19
AC1
C
128 139Right-handed alpha
Helix 20
AC2
C
193 213Right-handed alpha
Helix 21
AC3
C
230 245Right-handed alpha
Helix 22
AC4
C
272 293Right-handed alpha
Helix 23
AC5
D
60 74Right-handed alpha
Helix 24
AC6
D
76 84Right-handed alpha
Helix 25
AC7
D
100 112Right-handed alpha
Helix 26
AC8
D
128 139Right-handed alpha
Helix 27
AC9
D
193 213Right-handed alpha
Helix 28
AD1
D
230 245Right-handed alpha
Helix 29
AD2
D
272 291Right-handed alpha
Helix 30
AD3
D
296 303Right-handed alpha
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There are 4 sheets in PDB entry 8GYB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 166first strand
Strand 2
A
143 147parallel
Strand 3
A
120 123parallel
Strand 4
A
179 182parallel
Strand 5
A
220 225parallel
Strand 6
A
262 265anti-parallel
Strand 7
A
248 250anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 166first strand
Strand 2
B
143 147parallel
Strand 3
B
120 123parallel
Strand 4
B
179 182parallel
Strand 5
B
220 225parallel
Strand 6
B
262 265anti-parallel
Strand 7
B
248 250anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
163 166first strand
Strand 2
C
143 147parallel
Strand 3
C
120 123parallel
Strand 4
C
179 182parallel
Strand 5
C
220 225parallel
Strand 6
C
262 265anti-parallel
Strand 7
C
248 250anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
163 166first strand
Strand 2
D
143 147parallel
Strand 3
D
120 123parallel
Strand 4
D
179 182parallel
Strand 5
D
220 225parallel
Strand 6
D
262 265anti-parallel
Strand 7
D
248 250anti-parallel
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