Analysis of interatomic Contacts of Structural Units in PDB entry:
8GYG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GYG entry

There are 2 chains in PDB entry 8GYG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 7ARG 306
B
 SER 2ARG 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8GYG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 54Right-handed alpha
Helix 2
AA2
A
57 59Right-handed 310
Helix 3
AA3
A
70 75Right-handed alpha
Helix 4
AA4
A
76 87Right-handed alpha
Helix 5
AA5
A
100 119Right-handed alpha
Helix 6
AA6
A
166 172Right-handed alpha
Helix 7
AA7
A
195 202Right-handed alpha
Helix 8
AA8
A
214 226Right-handed alpha
Helix 9
AA9
A
230 245Right-handed alpha
Helix 10
AB1
A
247 259Right-handed alpha
Helix 11
AB2
A
274 287Right-handed alpha
Helix 12
AB3
B
46 54Right-handed alpha
Helix 13
AB4
B
57 59Right-handed 310
Helix 14
AB5
B
70 75Right-handed alpha
Helix 15
AB6
B
76 87Right-handed alpha
Helix 16
AB7
B
100 119Right-handed alpha
Helix 17
AB8
B
166 172Right-handed alpha
Helix 18
AB9
B
195 202Right-handed alpha
Helix 19
AC1
B
214 226Right-handed alpha
Helix 20
AC2
B
230 245Right-handed alpha
Helix 21
AC3
B
247 259Right-handed alpha
Helix 22
AC4
B
274 287Right-handed alpha
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There are 4 sheets in PDB entry 8GYG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 138first strand
Strand 2
A
93 97parallel
Strand 3
A
61 65parallel
Strand 4
A
37 43parallel
Strand 5
A
29 34anti-parallel
Strand 6
A
9 14anti-parallel
Strand 7
A
300 303anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
151 156anti-parallel
Strand 3
A
175 181anti-parallel
Strand 4
A
184 188anti-parallel
Strand 5
A
207 213parallel
Strand 6
A
262 269parallel
Strand 7
A
292 295parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 138first strand
Strand 2
B
93 97parallel
Strand 3
B
61 65parallel
Strand 4
B
37 43parallel
Strand 5
B
29 34anti-parallel
Strand 6
B
9 14anti-parallel
Strand 7
B
300 303anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 146first strand
Strand 2
B
151 156anti-parallel
Strand 3
B
175 181anti-parallel
Strand 4
B
184 188anti-parallel
Strand 5
B
207 213parallel
Strand 6
B
262 269parallel
Strand 7
B
292 295parallel
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