Analysis of interatomic Contacts of Structural Units in PDB entry:
8GYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GYJ entry

There are 2 chains in PDB entry 8GYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 2ALA 429
A
 SER 2ALA 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8GYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
4 8Right-handed 310
Helix 2
AA2
B
14 18Right-handed 310
Helix 3
AA3
B
26 39Right-handed alpha
Helix 4
AA4
B
50 64Right-handed alpha
Helix 5
AA5
B
73 85Right-handed alpha
Helix 6
AA6
B
101 110Right-handed alpha
Helix 7
AA7
B
127 135Right-handed alpha
Helix 8
AA8
B
146 150Right-handed 310
Helix 9
AA9
B
153 165Right-handed alpha
Helix 10
AB1
B
215 226Right-handed alpha
Helix 11
AB2
B
252 285Right-handed alpha
Helix 12
AB3
B
312 316Right-handed 310
Helix 13
AB4
B
321 336Right-handed alpha
Helix 14
AB5
B
347 350Right-handed 310
Helix 15
AB6
B
351 357Right-handed alpha
Helix 16
AB7
B
380 389Right-handed alpha
Helix 17
AB8
B
396 399Right-handed 310
Helix 18
AB9
B
402 418Right-handed alpha
Helix 19
AC1
B
419 429Right-handed alpha
Helix 20
AC2
A
4 8Right-handed 310
Helix 21
AC3
A
14 18Right-handed 310
Helix 22
AC4
A
26 40Right-handed alpha
Helix 23
AC5
A
50 64Right-handed alpha
Helix 24
AC6
A
73 85Right-handed alpha
Helix 25
AC7
A
100 110Right-handed alpha
Helix 26
AC8
A
127 135Right-handed alpha
Helix 27
AC9
A
146 150Right-handed 310
Helix 28
AD1
A
153 165Right-handed alpha
Helix 29
AD2
A
215 226Right-handed alpha
Helix 30
AD3
A
252 264Right-handed alpha
Helix 31
AD4
A
265 286Right-handed alpha
Helix 32
AD5
A
312 316Right-handed 310
Helix 33
AD6
A
321 336Right-handed alpha
Helix 34
AD7
A
347 350Right-handed 310
Helix 35
AD8
A
351 357Right-handed alpha
Helix 36
AD9
A
365 370Right-handed alpha
Helix 37
AE1
A
380 389Right-handed alpha
Helix 38
AE2
A
396 399Right-handed 310
Helix 39
AE3
A
402 418Right-handed alpha
Helix 40
AE4
A
419 427Right-handed alpha
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There are 6 sheets in PDB entry 8GYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 71first strand
Strand 2
B
209 213anti-parallel
Strand 3
B
191 195anti-parallel
Strand 4
B
167 171parallel
Strand 5
B
139 142parallel
Strand 6
B
92 96parallel
Strand 7
B
113 117parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 180first strand
Strand 2
B
183 184anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
290 291first strand
Strand 2
B
305 310anti-parallel
Strand 3
B
390 394anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 71first strand
Strand 2
A
209 213anti-parallel
Strand 3
A
191 195anti-parallel
Strand 4
A
167 171parallel
Strand 5
A
139 142parallel
Strand 6
A
92 96parallel
Strand 7
A
113 117parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
A
179 180anti-parallel
Strand 3
A
299 300anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 291first strand
Strand 2
A
305 310anti-parallel
Strand 3
A
390 394anti-parallel
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