Analysis of interatomic Contacts of Structural Units in PDB entry:
8GYK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GYK entry

There are 8 chains in PDB entry 8GYK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 21	ASP 336
B	GLY 21	ASP 336
C	GLY 21	ASP 336
D	GLY 21	ASP 336
E	GLY 21	ASP 336
F	GLY 21	ASP 336
G	GLY 21	ASP 336
H	GLY 21	ASP 336

There are114 helices in PDB entry 8GYK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	29	Right-handed 310
Helix 2	AA2	A	37	45	Right-handed alpha
Helix 3	AA3	A	48	54	Right-handed alpha
Helix 4	AA4	A	56	63	Right-handed alpha
Helix 5	AA5	A	67	82	Right-handed alpha
Helix 6	AA6	A	89	97	Right-handed alpha
Helix 7	AA7	A	106	113	Right-handed alpha
Helix 8	AA8	A	132	144	Right-handed alpha
Helix 9	AA9	A	145	146	Right-handed 310
Helix 10	AB1	A	147	151	Right-handed 310
Helix 11	AB2	A	167	179	Right-handed alpha
Helix 12	AB3	A	183	189	Right-handed alpha
Helix 13	AB4	A	196	212	Right-handed alpha
Helix 14	AB5	A	225	232	Right-handed alpha
Helix 15	AB6	A	237	260	Right-handed alpha
Helix 16	AB7	B	24	29	Right-handed 310
Helix 17	AB8	B	35	45	Right-handed alpha
Helix 18	AB9	B	48	54	Right-handed alpha
Helix 19	AC1	B	56	63	Right-handed alpha
Helix 20	AC2	B	67	80	Right-handed alpha
Helix 21	AC3	B	89	97	Right-handed alpha
Helix 22	AC4	B	105	109	Right-handed 310
Helix 23	AC5	B	132	144	Right-handed alpha
Helix 24	AC6	B	167	178	Right-handed alpha
Helix 25	AC7	B	181	187	Right-handed alpha
Helix 26	AC8	B	197	214	Right-handed alpha
Helix 27	AC9	B	225	232	Right-handed alpha
Helix 28	AD1	B	238	260	Right-handed alpha
Helix 29	AD2	B	290	296	Right-handed alpha
Helix 30	AD3	C	24	29	Right-handed 310
Helix 31	AD4	C	37	45	Right-handed alpha
Helix 32	AD5	C	48	54	Right-handed alpha
Helix 33	AD6	C	56	62	Right-handed alpha
Helix 34	AD7	C	67	82	Right-handed alpha
Helix 35	AD8	C	89	97	Right-handed alpha
Helix 36	AD9	C	106	113	Right-handed alpha
Helix 37	AE1	C	132	144	Right-handed alpha
Helix 38	AE2	C	145	146	Right-handed 310
Helix 39	AE3	C	147	151	Right-handed 310
Helix 40	AE4	C	167	179	Right-handed alpha
Helix 41	AE5	C	181	189	Right-handed alpha
Helix 42	AE6	C	196	214	Right-handed alpha
Helix 43	AE7	C	225	231	Right-handed alpha
Helix 44	AE8	C	234	236	Right-handed 310
Helix 45	AE9	C	237	260	Right-handed alpha
Helix 46	AF1	D	24	29	Right-handed 310
Helix 47	AF2	D	35	43	Right-handed alpha
Helix 48	AF3	D	48	55	Right-handed alpha
Helix 49	AF4	D	56	62	Right-handed alpha
Helix 50	AF5	D	67	82	Right-handed alpha
Helix 51	AF6	D	88	97	Right-handed alpha
Helix 52	AF7	D	132	144	Right-handed alpha
Helix 53	AF8	D	167	179	Right-handed alpha
Helix 54	AF9	D	181	189	Right-handed alpha
Helix 55	AG1	D	196	211	Right-handed alpha
Helix 56	AG2	D	225	232	Right-handed alpha
Helix 57	AG3	D	237	260	Right-handed alpha
Helix 58	AG4	E	24	29	Right-handed 310
Helix 59	AG5	E	37	45	Right-handed alpha
Helix 60	AG6	E	48	54	Right-handed alpha
Helix 61	AG7	E	56	62	Right-handed alpha
Helix 62	AG8	E	67	82	Right-handed alpha
Helix 63	AG9	E	89	97	Right-handed alpha
Helix 64	AH1	E	106	113	Right-handed alpha
Helix 65	AH2	E	132	144	Right-handed alpha
Helix 66	AH3	E	145	146	Right-handed 310
Helix 67	AH4	E	147	151	Right-handed 310
Helix 68	AH5	E	167	178	Right-handed alpha
Helix 69	AH6	E	183	189	Right-handed alpha
Helix 70	AH7	E	196	212	Right-handed alpha
Helix 71	AH8	E	225	232	Right-handed alpha
Helix 72	AH9	E	237	260	Right-handed alpha
Helix 73	AI1	F	24	29	Right-handed 310
Helix 74	AI2	F	35	43	Right-handed alpha
Helix 75	AI3	F	48	54	Right-handed alpha
Helix 76	AI4	F	56	62	Right-handed alpha
Helix 77	AI5	F	67	80	Right-handed alpha
Helix 78	AI6	F	89	95	Right-handed alpha
Helix 79	AI7	F	132	144	Right-handed alpha
Helix 80	AI8	F	147	151	Right-handed 310
Helix 81	AI9	F	167	179	Right-handed alpha
Helix 82	AJ1	F	181	187	Right-handed alpha
Helix 83	AJ2	F	198	214	Right-handed alpha
Helix 84	AJ3	F	225	232	Right-handed alpha
Helix 85	AJ4	F	238	260	Right-handed alpha
Helix 86	AJ5	G	24	29	Right-handed 310
Helix 87	AJ6	G	37	43	Right-handed alpha
Helix 88	AJ7	G	48	54	Right-handed alpha
Helix 89	AJ8	G	56	62	Right-handed alpha
Helix 90	AJ9	G	67	82	Right-handed alpha
Helix 91	AK1	G	89	97	Right-handed alpha
Helix 92	AK2	G	106	113	Right-handed alpha
Helix 93	AK3	G	132	144	Right-handed alpha
Helix 94	AK4	G	145	146	Right-handed 310
Helix 95	AK5	G	147	151	Right-handed 310
Helix 96	AK6	G	167	178	Right-handed alpha
Helix 97	AK7	G	181	189	Right-handed alpha
Helix 98	AK8	G	196	214	Right-handed alpha
Helix 99	AK9	G	225	231	Right-handed alpha
Helix 100	AL1	G	234	236	Right-handed 310
Helix 101	AL2	G	237	260	Right-handed alpha
Helix 102	AL3	G	290	296	Right-handed alpha
Helix 103	AL4	H	24	29	Right-handed 310
Helix 104	AL5	H	34	43	Right-handed alpha
Helix 105	AL6	H	48	54	Right-handed alpha
Helix 106	AL7	H	56	60	Right-handed 310
Helix 107	AL8	H	67	82	Right-handed alpha
Helix 108	AL9	H	88	97	Right-handed alpha
Helix 109	AM1	H	132	144	Right-handed alpha
Helix 110	AM2	H	167	178	Right-handed alpha
Helix 111	AM3	H	181	189	Right-handed alpha
Helix 112	AM4	H	196	211	Right-handed alpha
Helix 113	AM5	H	225	232	Right-handed alpha
Helix 114	AM6	H	237	260	Right-handed alpha

There are 14 sheets in PDB entry 8GYK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	B	190	191	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	125	first strand
Strand 2	A	264	266	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	C	190	191	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	124	first strand
Strand 2	B	262	265	parallel
Strand 3	B	218	221	parallel
Strand 4	B	159	160	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	306	first strand
Strand 2	B	309	313	anti-parallel
Strand 3	B	325	327	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	D	190	193	anti-parallel
Strand 3	D	158	161	parallel
Strand 4	D	218	221	parallel
Strand 5	D	262	266	parallel
Strand 6	D	122	125	parallel
Strand 7	D	298	306	parallel
Strand 8	D	309	314	anti-parallel
Strand 9	D	326	328	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	266	first strand
Strand 2	C	123	125	parallel
Strand 3	C	298	299	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	303	first strand
Strand 2	C	311	313	anti-parallel
Strand 3	C	324	326	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	88	first strand
Strand 2	F	190	191	anti-parallel
Strand 3	F	158	160	parallel
Strand 4	F	218	221	parallel
Strand 5	F	262	266	parallel
Strand 6	F	122	125	parallel
Strand 7	F	298	304	parallel
Strand 8	F	310	313	anti-parallel
Strand 9	F	324	327	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	190	191	first strand
Strand 2	E	156	159	parallel
Strand 3	E	216	220	parallel
Strand 4	E	262	264	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	87	88	first strand
Strand 2	G	190	191	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	87	88	first strand
Strand 2	H	190	193	anti-parallel
Strand 3	H	158	161	parallel
Strand 4	H	218	221	parallel
Strand 5	H	262	266	parallel
Strand 6	H	122	125	parallel
Strand 7	H	298	299	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	264	266	first strand
Strand 2	G	123	126	parallel
Strand 3	G	298	303	parallel
Strand 4	G	311	312	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	301	303	first strand
Strand 2	H	309	313	anti-parallel
Strand 3	H	325	328	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GYK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GYK