Analysis of interatomic Contacts of Structural Units in PDB entry:
8GYP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GYP entry

There are 7 chains in PDB entry 8GYP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 20	GLY 374
B	ARG 20	GLY 374
C	ARG 20	GLY 374
D	ARG 20	GLY 374
E	ARG 20	GLY 374
F	ARG 20	GLY 374
G	ARG 20	GLY 374

There are106 helices in PDB entry 8GYP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	28	Right-handed alpha
Helix 2	AA2	A	33	61	Right-handed alpha
Helix 3	AA3	A	73	87	Right-handed alpha
Helix 4	AA4	A	104	108	Right-handed 310
Helix 5	AA5	A	109	157	Right-handed alpha
Helix 6	AA6	A	157	168	Right-handed alpha
Helix 7	AA7	A	170	183	Right-handed alpha
Helix 8	AA8	A	189	200	Right-handed alpha
Helix 9	AA9	A	203	230	Right-handed alpha
Helix 10	AB1	A	265	296	Right-handed alpha
Helix 11	AB2	A	300	307	Right-handed alpha
Helix 12	AB3	A	308	316	Right-handed alpha
Helix 13	AB4	A	324	341	Right-handed alpha
Helix 14	AB5	A	345	356	Right-handed alpha
Helix 15	AB6	A	364	374	Right-handed alpha
Helix 16	AB7	B	21	28	Right-handed alpha
Helix 17	AB8	B	32	60	Right-handed alpha
Helix 18	AB9	B	73	87	Right-handed alpha
Helix 19	AC1	B	104	108	Right-handed 310
Helix 20	AC2	B	109	133	Right-handed alpha
Helix 21	AC3	B	133	157	Right-handed alpha
Helix 22	AC4	B	157	168	Right-handed alpha
Helix 23	AC5	B	170	183	Right-handed alpha
Helix 24	AC6	B	189	200	Right-handed alpha
Helix 25	AC7	B	203	230	Right-handed alpha
Helix 26	AC8	B	265	296	Right-handed alpha
Helix 27	AC9	B	300	307	Right-handed alpha
Helix 28	AD1	B	308	316	Right-handed alpha
Helix 29	AD2	B	324	341	Right-handed alpha
Helix 30	AD3	B	345	356	Right-handed alpha
Helix 31	AD4	B	364	374	Right-handed alpha
Helix 32	AD5	C	21	28	Right-handed alpha
Helix 33	AD6	C	32	60	Right-handed alpha
Helix 34	AD7	C	73	87	Right-handed alpha
Helix 35	AD8	C	104	108	Right-handed 310
Helix 36	AD9	C	109	157	Right-handed alpha
Helix 37	AE1	C	157	168	Right-handed alpha
Helix 38	AE2	C	170	183	Right-handed alpha
Helix 39	AE3	C	189	200	Right-handed alpha
Helix 40	AE4	C	203	230	Right-handed alpha
Helix 41	AE5	C	265	296	Right-handed alpha
Helix 42	AE6	C	300	307	Right-handed alpha
Helix 43	AE7	C	308	316	Right-handed alpha
Helix 44	AE8	C	324	341	Right-handed alpha
Helix 45	AE9	C	342	356	Right-handed alpha
Helix 46	AF1	C	364	374	Right-handed alpha
Helix 47	AF2	D	21	28	Right-handed alpha
Helix 48	AF3	D	33	60	Right-handed alpha
Helix 49	AF4	D	73	87	Right-handed alpha
Helix 50	AF5	D	104	108	Right-handed 310
Helix 51	AF6	D	109	157	Right-handed alpha
Helix 52	AF7	D	157	168	Right-handed alpha
Helix 53	AF8	D	170	183	Right-handed alpha
Helix 54	AF9	D	189	200	Right-handed alpha
Helix 55	AG1	D	203	230	Right-handed alpha
Helix 56	AG2	D	265	296	Right-handed alpha
Helix 57	AG3	D	300	307	Right-handed alpha
Helix 58	AG4	D	308	316	Right-handed alpha
Helix 59	AG5	D	324	341	Right-handed alpha
Helix 60	AG6	D	345	356	Right-handed alpha
Helix 61	AG7	D	364	374	Right-handed alpha
Helix 62	AG8	E	21	28	Right-handed alpha
Helix 63	AG9	E	33	61	Right-handed alpha
Helix 64	AH1	E	73	87	Right-handed alpha
Helix 65	AH2	E	104	108	Right-handed 310
Helix 66	AH3	E	109	157	Right-handed alpha
Helix 67	AH4	E	157	168	Right-handed alpha
Helix 68	AH5	E	170	183	Right-handed alpha
Helix 69	AH6	E	189	200	Right-handed alpha
Helix 70	AH7	E	203	230	Right-handed alpha
Helix 71	AH8	E	265	296	Right-handed alpha
Helix 72	AH9	E	300	307	Right-handed alpha
Helix 73	AI1	E	308	316	Right-handed alpha
Helix 74	AI2	E	324	341	Right-handed alpha
Helix 75	AI3	E	345	356	Right-handed alpha
Helix 76	AI4	E	364	374	Right-handed alpha
Helix 77	AI5	F	21	28	Right-handed alpha
Helix 78	AI6	F	33	61	Right-handed alpha
Helix 79	AI7	F	73	87	Right-handed alpha
Helix 80	AI8	F	104	108	Right-handed 310
Helix 81	AI9	F	109	157	Right-handed alpha
Helix 82	AJ1	F	157	168	Right-handed alpha
Helix 83	AJ2	F	170	183	Right-handed alpha
Helix 84	AJ3	F	189	200	Right-handed alpha
Helix 85	AJ4	F	203	230	Right-handed alpha
Helix 86	AJ5	F	265	296	Right-handed alpha
Helix 87	AJ6	F	300	307	Right-handed alpha
Helix 88	AJ7	F	308	316	Right-handed alpha
Helix 89	AJ8	F	324	341	Right-handed alpha
Helix 90	AJ9	F	345	356	Right-handed alpha
Helix 91	AK1	F	364	374	Right-handed alpha
Helix 92	AK2	G	21	28	Right-handed alpha
Helix 93	AK3	G	33	61	Right-handed alpha
Helix 94	AK4	G	73	87	Right-handed alpha
Helix 95	AK5	G	104	108	Right-handed 310
Helix 96	AK6	G	109	157	Right-handed alpha
Helix 97	AK7	G	157	168	Right-handed alpha
Helix 98	AK8	G	170	183	Right-handed alpha
Helix 99	AK9	G	189	200	Right-handed alpha
Helix 100	AL1	G	203	230	Right-handed alpha
Helix 101	AL2	G	265	295	Right-handed alpha
Helix 102	AL3	G	300	307	Right-handed alpha
Helix 103	AL4	G	308	316	Right-handed alpha
Helix 104	AL5	G	324	341	Right-handed alpha
Helix 105	AL6	G	345	356	Right-handed alpha
Helix 106	AL7	G	364	374	Right-handed alpha

There are 7 sheets in PDB entry 8GYP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	A	260	263	anti-parallel
Strand 3	A	239	241	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	66	first strand
Strand 2	B	260	263	anti-parallel
Strand 3	B	239	241	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	66	first strand
Strand 2	C	260	263	anti-parallel
Strand 3	C	239	241	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	66	first strand
Strand 2	D	260	263	anti-parallel
Strand 3	D	239	241	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	66	first strand
Strand 2	E	260	263	anti-parallel
Strand 3	E	239	241	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	66	first strand
Strand 2	F	260	263	anti-parallel
Strand 3	F	239	241	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	64	66	first strand
Strand 2	G	260	263	anti-parallel
Strand 3	G	239	241	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GYP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GYP