Analysis of interatomic Contacts of Structural Units in PDB entry:
8GYQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GYQ entry

There are 7 chains in PDB entry 8GYQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 42	ASP 392
B	LEU 42	ASP 392
C	LEU 42	ASP 392
D	LEU 42	ASP 392
E	LEU 42	ASP 392
F	LEU 42	ASP 392
G	LEU 42	ASP 392

There are 98 helices in PDB entry 8GYQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	76	Right-handed alpha
Helix 2	AA2	A	88	102	Right-handed alpha
Helix 3	AA3	A	118	183	Right-handed alpha
Helix 4	AA4	A	190	202	Right-handed alpha
Helix 5	AA5	A	204	219	Right-handed alpha
Helix 6	AA6	A	221	251	Right-handed alpha
Helix 7	AA7	A	283	314	Right-handed alpha
Helix 8	AA8	A	319	329	Right-handed alpha
Helix 9	AA9	A	333	337	Right-handed 310
Helix 10	AB1	A	342	354	Right-handed alpha
Helix 11	AB2	A	355	357	Right-handed 310
Helix 12	AB3	A	358	367	Right-handed alpha
Helix 13	AB4	A	372	376	Right-handed 310
Helix 14	AB5	A	378	389	Right-handed alpha
Helix 15	AB6	B	48	76	Right-handed alpha
Helix 16	AB7	B	88	103	Right-handed alpha
Helix 17	AB8	B	118	183	Right-handed alpha
Helix 18	AB9	B	190	202	Right-handed alpha
Helix 19	AC1	B	204	219	Right-handed alpha
Helix 20	AC2	B	221	251	Right-handed alpha
Helix 21	AC3	B	283	314	Right-handed alpha
Helix 22	AC4	B	319	329	Right-handed alpha
Helix 23	AC5	B	333	337	Right-handed 310
Helix 24	AC6	B	342	354	Right-handed alpha
Helix 25	AC7	B	355	357	Right-handed 310
Helix 26	AC8	B	358	367	Right-handed alpha
Helix 27	AC9	B	372	376	Right-handed 310
Helix 28	AD1	B	378	389	Right-handed alpha
Helix 29	AD2	C	48	76	Right-handed alpha
Helix 30	AD3	C	88	103	Right-handed alpha
Helix 31	AD4	C	118	183	Right-handed alpha
Helix 32	AD5	C	190	202	Right-handed alpha
Helix 33	AD6	C	204	219	Right-handed alpha
Helix 34	AD7	C	221	251	Right-handed alpha
Helix 35	AD8	C	283	314	Right-handed alpha
Helix 36	AD9	C	319	329	Right-handed alpha
Helix 37	AE1	C	333	337	Right-handed 310
Helix 38	AE2	C	342	354	Right-handed alpha
Helix 39	AE3	C	355	357	Right-handed 310
Helix 40	AE4	C	358	367	Right-handed alpha
Helix 41	AE5	C	372	376	Right-handed 310
Helix 42	AE6	C	378	389	Right-handed alpha
Helix 43	AE7	D	48	76	Right-handed alpha
Helix 44	AE8	D	88	103	Right-handed alpha
Helix 45	AE9	D	118	183	Right-handed alpha
Helix 46	AF1	D	190	202	Right-handed alpha
Helix 47	AF2	D	204	219	Right-handed alpha
Helix 48	AF3	D	221	251	Right-handed alpha
Helix 49	AF4	D	283	314	Right-handed alpha
Helix 50	AF5	D	319	329	Right-handed alpha
Helix 51	AF6	D	333	337	Right-handed 310
Helix 52	AF7	D	342	354	Right-handed alpha
Helix 53	AF8	D	355	357	Right-handed 310
Helix 54	AF9	D	358	367	Right-handed alpha
Helix 55	AG1	D	372	376	Right-handed 310
Helix 56	AG2	D	378	389	Right-handed alpha
Helix 57	AG3	E	48	76	Right-handed alpha
Helix 58	AG4	E	88	103	Right-handed alpha
Helix 59	AG5	E	118	183	Right-handed alpha
Helix 60	AG6	E	190	202	Right-handed alpha
Helix 61	AG7	E	204	219	Right-handed alpha
Helix 62	AG8	E	221	251	Right-handed alpha
Helix 63	AG9	E	283	314	Right-handed alpha
Helix 64	AH1	E	319	329	Right-handed alpha
Helix 65	AH2	E	333	337	Right-handed 310
Helix 66	AH3	E	342	354	Right-handed alpha
Helix 67	AH4	E	355	357	Right-handed 310
Helix 68	AH5	E	358	367	Right-handed alpha
Helix 69	AH6	E	372	376	Right-handed 310
Helix 70	AH7	E	378	389	Right-handed alpha
Helix 71	AH8	F	48	76	Right-handed alpha
Helix 72	AH9	F	88	102	Right-handed alpha
Helix 73	AI1	F	118	183	Right-handed alpha
Helix 74	AI2	F	190	202	Right-handed alpha
Helix 75	AI3	F	204	219	Right-handed alpha
Helix 76	AI4	F	221	251	Right-handed alpha
Helix 77	AI5	F	283	314	Right-handed alpha
Helix 78	AI6	F	319	329	Right-handed alpha
Helix 79	AI7	F	333	337	Right-handed 310
Helix 80	AI8	F	342	354	Right-handed alpha
Helix 81	AI9	F	355	357	Right-handed 310
Helix 82	AJ1	F	358	367	Right-handed alpha
Helix 83	AJ2	F	372	376	Right-handed 310
Helix 84	AJ3	F	378	389	Right-handed alpha
Helix 85	AJ4	G	48	76	Right-handed alpha
Helix 86	AJ5	G	88	103	Right-handed alpha
Helix 87	AJ6	G	118	183	Right-handed alpha
Helix 88	AJ7	G	190	202	Right-handed alpha
Helix 89	AJ8	G	204	219	Right-handed alpha
Helix 90	AJ9	G	221	251	Right-handed alpha
Helix 91	AK1	G	283	314	Right-handed alpha
Helix 92	AK2	G	319	329	Right-handed alpha
Helix 93	AK3	G	333	337	Right-handed 310
Helix 94	AK4	G	342	354	Right-handed alpha
Helix 95	AK5	G	355	357	Right-handed 310
Helix 96	AK6	G	358	367	Right-handed alpha
Helix 97	AK7	G	372	376	Right-handed 310
Helix 98	AK8	G	378	389	Right-handed alpha

There are 7 sheets in PDB entry 8GYQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	81	first strand
Strand 2	A	276	280	anti-parallel
Strand 3	A	256	260	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	81	first strand
Strand 2	B	276	280	anti-parallel
Strand 3	B	256	260	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	81	first strand
Strand 2	C	276	280	anti-parallel
Strand 3	C	256	260	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	81	first strand
Strand 2	D	276	280	anti-parallel
Strand 3	D	256	260	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	81	first strand
Strand 2	E	276	280	anti-parallel
Strand 3	E	256	260	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	81	first strand
Strand 2	F	276	280	anti-parallel
Strand 3	F	256	260	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	80	81	first strand
Strand 2	G	276	280	anti-parallel
Strand 3	G	256	260	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GYQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GYQ