Analysis of interatomic Contacts of Structural Units in PDB entry:
8GYW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GYW entry

There are 2 chains in PDB entry 8GYW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 28LYS 407
A
 THR 28LYS 407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8GYW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
28 37Right-handed alpha
Helix 2
AA2
B
44 53Right-handed alpha
Helix 3
AA3
B
64 79Right-handed alpha
Helix 4
AA4
B
84 107Right-handed alpha
Helix 5
AA5
B
115 143Right-handed alpha
Helix 6
AA6
B
147 173Right-handed alpha
Helix 7
AA7
B
174 177Right-handed 310
Helix 8
AA8
B
178 204Right-handed alpha
Helix 9
AA9
B
212 237Right-handed alpha
Helix 10
AB1
B
247 272Right-handed alpha
Helix 11
AB2
B
275 279Right-handed 310
Helix 12
AB3
B
287 307Right-handed alpha
Helix 13
AB4
B
310 315Right-handed alpha
Helix 14
AB5
B
315 341Right-handed alpha
Helix 15
AB6
B
348 350Right-handed 310
Helix 16
AB7
B
351 363Right-handed alpha
Helix 17
AB8
B
368 400Right-handed alpha
Helix 18
AB9
A
29 37Right-handed alpha
Helix 19
AC1
A
44 53Right-handed alpha
Helix 20
AC2
A
64 79Right-handed alpha
Helix 21
AC3
A
84 107Right-handed alpha
Helix 22
AC4
A
115 143Right-handed alpha
Helix 23
AC5
A
147 173Right-handed alpha
Helix 24
AC6
A
174 177Right-handed 310
Helix 25
AC7
A
178 204Right-handed alpha
Helix 26
AC8
A
212 237Right-handed alpha
Helix 27
AC9
A
247 272Right-handed alpha
Helix 28
AD1
A
275 279Right-handed 310
Helix 29
AD2
A
287 307Right-handed alpha
Helix 30
AD3
A
310 315Right-handed alpha
Helix 31
AD4
A
315 341Right-handed alpha
Helix 32
AD5
A
348 350Right-handed 310
Helix 33
AD6
A
351 363Right-handed alpha
Helix 34
AD7
A
368 400Right-handed alpha
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There are 4 sheets in PDB entry 8GYW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 59first strand
Strand 2
B
206 207parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 239first strand
Strand 2
B
244 245anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
206 207parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
244 245anti-parallel
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