Analysis of interatomic Contacts of Structural Units in PDB entry:
8GYY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GYY entry

There are 4 chains in PDB entry 8GYY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLN 48	PRO 803
A	THR 47	PRO 803
C	GLN 48	PRO 803
D	GLN 48	PRO 803

There are103 helices in PDB entry 8GYY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	60	73	Right-handed alpha
Helix 2	AA2	B	75	83	Right-handed alpha
Helix 3	AA3	B	97	101	Right-handed 310
Helix 4	AA4	B	125	133	Right-handed alpha
Helix 5	AA5	B	134	153	Right-handed alpha
Helix 6	AA6	B	174	178	Right-handed 310
Helix 7	AA7	B	182	200	Right-handed alpha
Helix 8	AA8	B	228	233	Right-handed alpha
Helix 9	AA9	B	241	248	Right-handed alpha
Helix 10	AB1	B	249	259	Right-handed alpha
Helix 11	AB2	B	279	284	Right-handed alpha
Helix 12	AB3	B	307	314	Right-handed alpha
Helix 13	AB4	B	323	327	Right-handed 310
Helix 14	AB5	B	333	342	Right-handed alpha
Helix 15	AB6	B	346	364	Right-handed alpha
Helix 16	AB7	B	397	410	Right-handed alpha
Helix 17	AB8	B	432	435	Right-handed 310
Helix 18	AB9	B	476	488	Right-handed alpha
Helix 19	AC1	B	504	513	Right-handed alpha
Helix 20	AC2	B	514	516	Right-handed 310
Helix 21	AC3	B	541	553	Right-handed alpha
Helix 22	AC4	B	589	599	Right-handed alpha
Helix 23	AC5	B	615	619	Right-handed 310
Helix 24	AC6	B	643	650	Right-handed alpha
Helix 25	AC7	B	765	768	Right-handed 310
Helix 26	AC8	A	60	73	Right-handed alpha
Helix 27	AC9	A	75	83	Right-handed alpha
Helix 28	AD1	A	97	101	Right-handed 310
Helix 29	AD2	A	125	133	Right-handed alpha
Helix 30	AD3	A	134	153	Right-handed alpha
Helix 31	AD4	A	174	178	Right-handed 310
Helix 32	AD5	A	182	200	Right-handed alpha
Helix 33	AD6	A	228	232	Right-handed 310
Helix 34	AD7	A	241	248	Right-handed alpha
Helix 35	AD8	A	250	259	Right-handed alpha
Helix 36	AD9	A	279	284	Right-handed alpha
Helix 37	AE1	A	307	314	Right-handed alpha
Helix 38	AE2	A	323	327	Right-handed 310
Helix 39	AE3	A	333	342	Right-handed alpha
Helix 40	AE4	A	346	364	Right-handed alpha
Helix 41	AE5	A	397	410	Right-handed alpha
Helix 42	AE6	A	432	435	Right-handed 310
Helix 43	AE7	A	476	488	Right-handed alpha
Helix 44	AE8	A	504	513	Right-handed alpha
Helix 45	AE9	A	514	516	Right-handed 310
Helix 46	AF1	A	541	553	Right-handed alpha
Helix 47	AF2	A	589	599	Right-handed alpha
Helix 48	AF3	A	615	619	Right-handed 310
Helix 49	AF4	A	643	651	Right-handed alpha
Helix 50	AF5	A	765	768	Right-handed 310
Helix 51	AF6	C	60	73	Right-handed alpha
Helix 52	AF7	C	75	82	Right-handed alpha
Helix 53	AF8	C	97	101	Right-handed 310
Helix 54	AF9	C	125	132	Right-handed alpha
Helix 55	AG1	C	134	153	Right-handed alpha
Helix 56	AG2	C	174	178	Right-handed 310
Helix 57	AG3	C	182	200	Right-handed alpha
Helix 58	AG4	C	230	232	Right-handed 310
Helix 59	AG5	C	241	248	Right-handed alpha
Helix 60	AG6	C	249	260	Right-handed alpha
Helix 61	AG7	C	277	279	Right-handed 310
Helix 62	AG8	C	307	314	Right-handed alpha
Helix 63	AG9	C	323	327	Right-handed 310
Helix 64	AH1	C	333	342	Right-handed alpha
Helix 65	AH2	C	346	364	Right-handed alpha
Helix 66	AH3	C	397	410	Right-handed alpha
Helix 67	AH4	C	432	435	Right-handed 310
Helix 68	AH5	C	476	488	Right-handed alpha
Helix 69	AH6	C	504	513	Right-handed alpha
Helix 70	AH7	C	514	516	Right-handed 310
Helix 71	AH8	C	541	553	Right-handed alpha
Helix 72	AH9	C	586	588	Right-handed 310
Helix 73	AI1	C	589	600	Right-handed alpha
Helix 74	AI2	C	615	619	Right-handed 310
Helix 75	AI3	C	643	650	Right-handed alpha
Helix 76	AI4	C	765	768	Right-handed 310
Helix 77	AI5	D	60	74	Right-handed alpha
Helix 78	AI6	D	75	83	Right-handed alpha
Helix 79	AI7	D	125	131	Right-handed alpha
Helix 80	AI8	D	134	152	Right-handed alpha
Helix 81	AI9	D	174	178	Right-handed 310
Helix 82	AJ1	D	182	200	Right-handed alpha
Helix 83	AJ2	D	228	233	Right-handed alpha
Helix 84	AJ3	D	241	248	Right-handed alpha
Helix 85	AJ4	D	249	259	Right-handed alpha
Helix 86	AJ5	D	275	278	Right-handed 310
Helix 87	AJ6	D	279	285	Right-handed alpha
Helix 88	AJ7	D	307	313	Right-handed alpha
Helix 89	AJ8	D	322	327	Right-handed 310
Helix 90	AJ9	D	333	342	Right-handed alpha
Helix 91	AK1	D	346	364	Right-handed alpha
Helix 92	AK2	D	397	410	Right-handed alpha
Helix 93	AK3	D	432	435	Right-handed 310
Helix 94	AK4	D	476	488	Right-handed alpha
Helix 95	AK5	D	504	513	Right-handed alpha
Helix 96	AK6	D	514	516	Right-handed 310
Helix 97	AK7	D	541	553	Right-handed alpha
Helix 98	AK8	D	568	573	Right-handed alpha
Helix 99	AK9	D	586	588	Right-handed 310
Helix 100	AL1	D	589	599	Right-handed alpha
Helix 101	AL2	D	615	619	Right-handed 310
Helix 102	AL3	D	643	650	Right-handed alpha
Helix 103	AL4	D	765	768	Right-handed 310

There are 25 sheets in PDB entry 8GYY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	93	first strand
Strand 2	B	106	108	anti-parallel
Strand 3	B	156	157	parallel
Strand 4	B	203	209	parallel
Strand 5	B	263	266	parallel
Strand 6	B	296	299	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	275	first strand
Strand 2	B	270	271	anti-parallel
Strand 3	B	237	239	parallel
Strand 4	B	633	635	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	415	first strand
Strand 2	B	577	584	anti-parallel
Strand 3	B	556	562	parallel
Strand 4	B	518	525	parallel
Strand 5	B	426	430	parallel
Strand 6	B	491	495	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	667	675	first strand
Strand 2	B	705	715	anti-parallel
Strand 3	B	755	763	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	740	750	first strand
Strand 2	B	721	730	anti-parallel
Strand 3	B	784	789	anti-parallel
Strand 4	B	797	801	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	769	771	first strand
Strand 2	B	776	778	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	106	109	anti-parallel
Strand 3	A	156	158	parallel
Strand 4	A	203	209	parallel
Strand 5	A	263	266	parallel
Strand 6	A	296	299	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	270	271	anti-parallel
Strand 3	A	237	239	parallel
Strand 4	A	633	635	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	415	first strand
Strand 2	A	577	582	anti-parallel
Strand 3	A	556	562	parallel
Strand 4	A	518	525	parallel
Strand 5	A	426	430	parallel
Strand 6	A	491	495	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	667	675	first strand
Strand 2	A	705	715	anti-parallel
Strand 3	A	755	763	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	740	750	first strand
Strand 2	A	721	730	anti-parallel
Strand 3	A	784	789	anti-parallel
Strand 4	A	797	801	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	769	771	first strand
Strand 2	A	776	778	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	86	first strand
Strand 2	C	92	94	anti-parallel
Strand 3	C	106	108	anti-parallel
Strand 4	C	156	157	parallel
Strand 5	C	203	209	parallel
Strand 6	C	263	266	parallel
Strand 7	C	296	299	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	224	first strand
Strand 2	C	227	228	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	275	first strand
Strand 2	C	270	271	anti-parallel
Strand 3	C	237	239	parallel
Strand 4	C	633	635	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	411	415	first strand
Strand 2	C	577	582	anti-parallel
Strand 3	C	556	562	parallel
Strand 4	C	518	525	parallel
Strand 5	C	426	430	parallel
Strand 6	C	491	495	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	667	675	first strand
Strand 2	C	705	715	anti-parallel
Strand 3	C	755	763	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	740	750	first strand
Strand 2	C	721	730	anti-parallel
Strand 3	C	784	789	anti-parallel
Strand 4	C	797	801	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	769	770	first strand
Strand 2	C	777	778	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	94	first strand
Strand 2	D	105	108	anti-parallel
Strand 3	D	156	157	parallel
Strand 4	D	203	209	parallel
Strand 5	D	263	266	parallel
Strand 6	D	296	299	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	271	first strand
Strand 2	D	237	239	parallel
Strand 3	D	633	635	parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	411	415	first strand
Strand 2	D	577	584	anti-parallel
Strand 3	D	556	562	parallel
Strand 4	D	518	525	parallel
Strand 5	D	426	430	parallel
Strand 6	D	491	495	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	667	675	first strand
Strand 2	D	705	715	anti-parallel
Strand 3	D	755	763	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	740	750	first strand
Strand 2	D	721	730	anti-parallel
Strand 3	D	784	789	anti-parallel
Strand 4	D	797	801	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	769	771	first strand
Strand 2	D	776	778	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GYY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GYY