Analysis of interatomic Contacts of Structural Units in PDB entry:
8GZ2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GZ2 entry

There are 3 chains in PDB entry 8GZ2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLY 20	ALA 192
B	PHE 106	ALA 1772
C	SER 29	SER 29

There are 62 helices in PDB entry 8GZ2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	153	190	Right-handed alpha
Helix 2	AA2	B	119	131	Right-handed alpha
Helix 3	AA3	B	131	151	Right-handed alpha
Helix 4	AA4	B	155	157	Right-handed 310
Helix 5	AA5	B	158	179	Right-handed alpha
Helix 6	AA6	B	192	209	Right-handed alpha
Helix 7	AA7	B	215	222	Right-handed alpha
Helix 8	AA8	B	223	234	Right-handed alpha
Helix 9	AA9	B	236	251	Right-handed alpha
Helix 10	AB1	B	251	273	Right-handed alpha
Helix 11	AB2	B	275	279	Right-handed 310
Helix 12	AB3	B	287	291	Right-handed 310
Helix 13	AB4	B	301	306	Right-handed alpha
Helix 14	AB5	B	308	312	Right-handed 310
Helix 15	AB6	B	346	350	Right-handed 310
Helix 16	AB7	B	355	369	Right-handed alpha
Helix 17	AB8	B	371	384	Right-handed alpha
Helix 18	AB9	B	387	396	Right-handed alpha
Helix 19	AC1	B	399	424	Right-handed alpha
Helix 20	AC2	B	722	731	Right-handed alpha
Helix 21	AC3	B	736	750	Right-handed alpha
Helix 22	AC4	B	751	772	Right-handed alpha
Helix 23	AC5	B	778	807	Right-handed alpha
Helix 24	AC6	B	808	814	Right-handed alpha
Helix 25	AC7	B	815	834	Right-handed alpha
Helix 26	AC8	B	842	857	Right-handed 310
Helix 27	AC9	B	859	873	Right-handed alpha
Helix 28	AD1	B	875	897	Right-handed alpha
Helix 29	AD2	B	899	904	Right-handed alpha
Helix 30	AD3	B	904	909	Right-handed alpha
Helix 31	AD4	B	921	935	Right-handed alpha
Helix 32	AD5	B	937	949	Right-handed alpha
Helix 33	AD6	B	949	981	Right-handed alpha
Helix 34	AD7	B	1183	1196	Right-handed alpha
Helix 35	AD8	B	1197	1214	Right-handed alpha
Helix 36	AD9	B	1225	1255	Right-handed alpha
Helix 37	AE1	B	1255	1261	Right-handed alpha
Helix 38	AE2	B	1262	1284	Right-handed alpha
Helix 39	AE3	B	1291	1297	Right-handed alpha
Helix 40	AE4	B	1298	1302	Right-handed 310
Helix 41	AE5	B	1303	1310	Right-handed alpha
Helix 42	AE6	B	1310	1324	Right-handed alpha
Helix 43	AE7	B	1324	1350	Right-handed alpha
Helix 44	AE8	B	1372	1383	Right-handed alpha
Helix 45	AE9	B	1398	1412	Right-handed alpha
Helix 46	AF1	B	1414	1424	Right-handed alpha
Helix 47	AF2	B	1437	1439	Right-handed 310
Helix 48	AF3	B	1440	1451	Right-handed alpha
Helix 49	AF4	B	1453	1474	Right-handed alpha
Helix 50	AF5	B	1482	1496	Right-handed alpha
Helix 51	AF6	B	1509	1521	Right-handed alpha
Helix 52	AF7	B	1521	1541	Right-handed alpha
Helix 53	AF8	B	1547	1581	Right-handed alpha
Helix 54	AF9	B	1583	1605	Right-handed alpha
Helix 55	AG1	B	1612	1622	Right-handed alpha
Helix 56	AG2	B	1623	1634	Right-handed 310
Helix 57	AG3	B	1635	1673	Right-handed alpha
Helix 58	AG4	B	1690	1703	Right-handed alpha
Helix 59	AG5	B	1706	1712	Right-handed alpha
Helix 60	AG6	B	1717	1721	Right-handed 310
Helix 61	AG7	B	1738	1772	Right-handed alpha
Helix 62	AG8	C	118	122	Right-handed 310

There are 6 sheets in PDB entry 8GZ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	31	first strand
Strand 2	D	134	147	parallel
Strand 3	D	117	128	anti-parallel
Strand 4	D	50	60	anti-parallel
Strand 5	D	68	73	anti-parallel
Strand 6	D	78	80	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	40	first strand
Strand 2	D	104	108	anti-parallel
Strand 3	D	90	92	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	283	first strand
Strand 2	B	337	338	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	33	first strand
Strand 2	C	51	52	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	40	first strand
Strand 2	C	142	146	parallel
Strand 3	C	123	130	anti-parallel
Strand 4	C	64	70	anti-parallel
Strand 5	C	77	84	anti-parallel
Strand 6	C	87	89	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	48	first strand
Strand 2	C	112	114	anti-parallel
Strand 3	C	99	101	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GZ2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GZ2