Analysis of interatomic Contacts of Structural Units in PDB entry:
8GZ7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GZ7 entry

There are 8 chains in PDB entry 8GZ7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 16	LYS 300
C	LYS 16	LYS 300
E	LYS 16	LYS 300
G	LYS 16	LYS 300
B	LYS 3	LYS 280
D	LYS 3	LYS 280
F	LYS 3	LYS 280
H	LYS 3	LYS 280

There are 22 helices in PDB entry 8GZ7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	203	207	Right-handed 310
Helix 2	AA2	A	210	214	Right-handed 310
Helix 3	AA3	A	215	220	Right-handed alpha
Helix 4	AA4	C	203	207	Right-handed 310
Helix 5	AA5	C	215	220	Right-handed alpha
Helix 6	AA6	E	203	207	Right-handed 310
Helix 7	AA7	E	210	214	Right-handed 310
Helix 8	AA8	E	215	220	Right-handed alpha
Helix 9	AA9	G	203	207	Right-handed 310
Helix 10	AB1	G	215	220	Right-handed alpha
Helix 11	AB2	B	186	191	Right-handed 310
Helix 12	AB3	B	193	197	Right-handed 310
Helix 13	AB4	B	198	203	Right-handed alpha
Helix 14	AB5	D	186	191	Right-handed 310
Helix 15	AB6	D	193	197	Right-handed 310
Helix 16	AB7	D	198	203	Right-handed alpha
Helix 17	AB8	F	186	191	Right-handed 310
Helix 18	AB9	F	193	197	Right-handed 310
Helix 19	AC1	F	198	203	Right-handed alpha
Helix 20	AC2	H	186	191	Right-handed 310
Helix 21	AC3	H	193	197	Right-handed 310
Helix 22	AC4	H	198	203	Right-handed alpha

There are 29 sheets in PDB entry 8GZ7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	28	first strand
Strand 2	A	33	44	anti-parallel
Strand 3	A	49	60	anti-parallel
Strand 4	A	226	233	anti-parallel
Strand 5	A	96	101	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	154	first strand
Strand 2	A	162	169	anti-parallel
Strand 3	A	74	89	anti-parallel
Strand 4	A	239	257	anti-parallel
Strand 5	A	262	282	anti-parallel
Strand 6	A	287	297	anti-parallel

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There are 17 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	118	first strand
Strand 2	A	138	148	anti-parallel
Strand 3	B	102	112	anti-parallel
Strand 4	B	130	140	anti-parallel
Strand 5	C	108	118	anti-parallel
Strand 6	C	138	148	anti-parallel
Strand 7	D	102	112	anti-parallel
Strand 8	D	129	140	anti-parallel
Strand 9	E	108	118	anti-parallel
Strand 10	E	137	148	anti-parallel
Strand 11	F	102	113	anti-parallel
Strand 12	F	129	140	anti-parallel
Strand 13	G	108	118	anti-parallel
Strand 14	G	138	148	anti-parallel
Strand 15	H	102	112	anti-parallel
Strand 16	H	129	140	anti-parallel
Strand 17	A	108	118	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	28	first strand
Strand 2	C	33	44	anti-parallel
Strand 3	C	49	60	anti-parallel
Strand 4	C	225	233	anti-parallel
Strand 5	C	96	101	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	154	first strand
Strand 2	C	162	169	anti-parallel
Strand 3	C	74	89	anti-parallel
Strand 4	C	239	257	anti-parallel
Strand 5	C	262	282	anti-parallel
Strand 6	C	287	297	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	28	first strand
Strand 2	E	33	43	anti-parallel
Strand 3	E	49	60	anti-parallel
Strand 4	E	226	233	anti-parallel
Strand 5	E	96	101	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	154	first strand
Strand 2	E	162	169	anti-parallel
Strand 3	E	74	89	anti-parallel
Strand 4	E	239	257	anti-parallel
Strand 5	E	262	282	anti-parallel
Strand 6	E	287	299	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	28	first strand
Strand 2	G	33	43	anti-parallel
Strand 3	G	49	60	anti-parallel
Strand 4	G	226	233	anti-parallel
Strand 5	G	96	101	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	150	154	first strand
Strand 2	G	162	169	anti-parallel
Strand 3	G	74	89	anti-parallel
Strand 4	G	239	257	anti-parallel
Strand 5	G	262	282	anti-parallel
Strand 6	G	287	299	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	22	first strand
Strand 2	B	27	36	anti-parallel
Strand 3	B	44	55	anti-parallel
Strand 4	B	208	215	anti-parallel
Strand 5	B	89	94	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	22	first strand
Strand 2	B	27	36	anti-parallel
Strand 3	B	44	55	anti-parallel
Strand 4	B	204	205	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	62	first strand
Strand 2	B	70	84	anti-parallel
Strand 3	B	154	160	anti-parallel
Strand 4	B	142	149	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	62	first strand
Strand 2	B	70	84	anti-parallel
Strand 3	B	222	241	anti-parallel
Strand 4	B	244	266	anti-parallel
Strand 5	B	271	278	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	164	first strand
Strand 2	B	169	171	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	22	first strand
Strand 2	D	27	36	anti-parallel
Strand 3	D	44	55	anti-parallel
Strand 4	D	209	215	anti-parallel
Strand 5	D	89	94	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	22	first strand
Strand 2	D	27	36	anti-parallel
Strand 3	D	44	55	anti-parallel
Strand 4	D	204	205	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	62	first strand
Strand 2	D	70	84	anti-parallel
Strand 3	D	154	160	anti-parallel
Strand 4	D	142	149	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	62	first strand
Strand 2	D	70	84	anti-parallel
Strand 3	D	222	241	anti-parallel
Strand 4	D	244	266	anti-parallel
Strand 5	D	271	278	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	165	first strand
Strand 2	D	168	171	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	22	first strand
Strand 2	F	27	36	anti-parallel
Strand 3	F	44	55	anti-parallel
Strand 4	F	208	215	anti-parallel
Strand 5	F	89	94	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	22	first strand
Strand 2	F	27	36	anti-parallel
Strand 3	F	44	55	anti-parallel
Strand 4	F	204	205	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	62	first strand
Strand 2	F	70	84	anti-parallel
Strand 3	F	154	160	anti-parallel
Strand 4	F	142	149	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	62	first strand
Strand 2	F	70	84	anti-parallel
Strand 3	F	222	241	anti-parallel
Strand 4	F	244	266	anti-parallel
Strand 5	F	271	278	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	165	first strand
Strand 2	F	168	171	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	22	first strand
Strand 2	H	27	36	anti-parallel
Strand 3	H	44	55	anti-parallel
Strand 4	H	208	215	anti-parallel
Strand 5	H	89	95	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	22	first strand
Strand 2	H	27	36	anti-parallel
Strand 3	H	44	55	anti-parallel
Strand 4	H	204	205	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	62	first strand
Strand 2	H	70	84	anti-parallel
Strand 3	H	154	160	anti-parallel
Strand 4	H	142	149	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	62	first strand
Strand 2	H	70	84	anti-parallel
Strand 3	H	222	241	anti-parallel
Strand 4	H	244	266	anti-parallel
Strand 5	H	271	278	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	162	164	first strand
Strand 2	H	169	171	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GZ7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GZ7