Analysis of interatomic Contacts of Structural Units in PDB entry:
8GZE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GZE entry

There are 4 chains in PDB entry 8GZE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 55PRO 317
B
 ASN 53VAL 318
E
 GLY 1GLU 5
D
 GLY 1GLU 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8GZE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 64Right-handed 310
Helix 2
AA2
A
65 71Right-handed alpha
Helix 3
AA3
A
78 92Right-handed alpha
Helix 4
AA4
A
94 110Right-handed alpha
Helix 5
AA5
A
113 122Right-handed alpha
Helix 6
AA6
A
130 139Right-handed alpha
Helix 7
AA7
A
157 164Right-handed alpha
Helix 8
AA8
A
176 186Right-handed alpha
Helix 9
AA9
A
217 228Right-handed alpha
Helix 10
AB1
A
268 284Right-handed alpha
Helix 11
AB2
B
53 57Right-handed 310
Helix 12
AB3
B
60 64Right-handed 310
Helix 13
AB4
B
65 71Right-handed alpha
Helix 14
AB5
B
78 92Right-handed alpha
Helix 15
AB6
B
94 110Right-handed alpha
Helix 16
AB7
B
113 121Right-handed alpha
Helix 17
AB8
B
130 139Right-handed alpha
Helix 18
AB9
B
159 164Right-handed alpha
Helix 19
AC1
B
176 186Right-handed alpha
Helix 20
AC2
B
217 228Right-handed alpha
Helix 21
AC3
B
268 284Right-handed alpha
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There are 4 sheets in PDB entry 8GZE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
286 294parallel
Strand 3
A
309 316anti-parallel
Strand 4
A
235 241anti-parallel
Strand 5
A
205 209parallel
Strand 6
A
146 152parallel
Strand 7
A
167 173parallel
Strand 8
A
189 191parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
296 298anti-parallel
Strand 3
A
305 306anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 73first strand
Strand 2
B
285 298parallel
Strand 3
B
126 127anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 73first strand
Strand 2
B
285 298parallel
Strand 3
B
305 317anti-parallel
Strand 4
B
235 241anti-parallel
Strand 5
B
205 209parallel
Strand 6
B
146 152parallel
Strand 7
B
167 173parallel
Strand 8
B
189 190parallel
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