Analysis of interatomic Contacts of Structural Units in PDB entry:
8GZG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GZG entry

There are 3 chains in PDB entry 8GZG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	ASN 232
B	GLN 3	ASP 226
C	ASP 11	GLY 925

There are109 helices in PDB entry 8GZG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	47	Right-handed alpha
Helix 2	AA2	A	74	82	Right-handed alpha
Helix 3	AA3	A	108	110	Right-handed 310
Helix 4	AA4	A	209	224	Right-handed alpha
Helix 5	AA5	B	31	46	Right-handed alpha
Helix 6	AA6	B	74	82	Right-handed alpha
Helix 7	AA7	B	205	219	Right-handed alpha
Helix 8	AA8	B	221	226	Right-handed alpha
Helix 9	AA9	C	16	24	Right-handed alpha
Helix 10	AB1	C	26	36	Right-handed alpha
Helix 11	AB2	C	51	54	Right-handed 310
Helix 12	AB3	C	62	69	Right-handed alpha
Helix 13	AB4	C	177	184	Right-handed alpha
Helix 14	AB5	C	188	193	Right-handed alpha
Helix 15	AB6	C	199	201	Right-handed 310
Helix 16	AB7	C	202	207	Right-handed alpha
Helix 17	AB8	C	216	225	Right-handed alpha
Helix 18	AB9	C	233	244	Right-handed alpha
Helix 19	AC1	C	252	263	Right-handed alpha
Helix 20	AC2	C	275	288	Right-handed alpha
Helix 21	AC3	C	289	292	Right-handed 310
Helix 22	AC4	C	309	330	Right-handed alpha
Helix 23	AC5	C	342	346	Right-handed 310
Helix 24	AC6	C	349	362	Right-handed alpha
Helix 25	AC7	C	373	381	Right-handed alpha
Helix 26	AC8	C	398	403	Right-handed alpha
Helix 27	AC9	C	405	409	Right-handed 310
Helix 28	AD1	C	520	524	Right-handed 310
Helix 29	AD2	C	526	530	Right-handed 310
Helix 30	AD3	C	531	542	Right-handed alpha
Helix 31	AD4	C	543	545	Right-handed 310
Helix 32	AD5	C	560	567	Right-handed alpha
Helix 33	AD6	C	676	681	Right-handed alpha
Helix 34	AD7	C	752	763	Right-handed alpha
Helix 35	AD8	C	855	859	Right-handed 310
Helix 36	AD9	C	865	881	Right-handed alpha
Helix 37	AE1	C	898	910	Right-handed alpha
Helix 38	AE2	C	988	998	Right-handed alpha
Helix 39	AE3	C	1000	1010	Right-handed alpha
Helix 40	AE4	C	1016	1028	Right-handed alpha
Helix 41	AE5	C	1037	1049	Right-handed alpha
Helix 42	AE6	D	18	27	Right-handed alpha
Helix 43	AE7	D	59	64	Right-handed alpha
Helix 44	AE8	D	95	99	Right-handed 310
Helix 45	AE9	D	114	119	Right-handed alpha
Helix 46	AF1	D	123	129	Right-handed alpha
Helix 47	AF2	D	132	140	Right-handed alpha
Helix 48	AF3	D	163	173	Right-handed alpha
Helix 49	AF4	D	189	199	Right-handed alpha
Helix 50	AF5	D	204	215	Right-handed alpha
Helix 51	AF6	D	217	219	Right-handed 310
Helix 52	AF7	D	220	237	Right-handed alpha
Helix 53	AF8	D	240	243	Right-handed 310
Helix 54	AF9	D	253	257	Right-handed 310
Helix 55	AG1	D	270	290	Right-handed alpha
Helix 56	AG2	D	295	315	Right-handed alpha
Helix 57	AG3	D	343	349	Right-handed alpha
Helix 58	AG4	D	376	384	Right-handed alpha
Helix 59	AG5	D	384	395	Right-handed alpha
Helix 60	AG6	D	400	409	Right-handed alpha
Helix 61	AG7	D	412	423	Right-handed alpha
Helix 62	AG8	D	437	439	Right-handed 310
Helix 63	AG9	D	460	465	Right-handed alpha
Helix 64	AH1	D	480	490	Right-handed alpha
Helix 65	AH2	D	492	496	Right-handed 310
Helix 66	AH3	D	511	521	Right-handed alpha
Helix 67	AH4	D	537	546	Right-handed alpha
Helix 68	AH5	D	610	625	Right-handed alpha
Helix 69	AH6	E	12	21	Right-handed alpha
Helix 70	AH7	E	28	44	Right-handed alpha
Helix 71	AH8	E	54	66	Right-handed alpha
Helix 72	AH9	F	71	82	Right-handed alpha
Helix 73	AI1	F	89	112	Right-handed alpha
Helix 74	AI2	F	174	197	Right-handed alpha
Helix 75	AI3	F	198	206	Right-handed alpha
Helix 76	AI4	F	214	232	Right-handed alpha
Helix 77	AI5	F	240	260	Right-handed alpha
Helix 78	AI6	F	267	288	Right-handed alpha
Helix 79	AI7	F	294	301	Right-handed alpha
Helix 80	AI8	F	304	315	Right-handed alpha
Helix 81	AI9	F	343	358	Right-handed alpha
Helix 82	AJ1	F	358	363	Right-handed alpha
Helix 83	AJ2	F	365	377	Right-handed alpha
Helix 84	AJ3	F	385	393	Right-handed alpha
Helix 85	AJ4	F	399	413	Right-handed alpha
Helix 86	AJ5	Z	9	24	Right-handed alpha
Helix 87	AJ6	Z	26	46	Right-handed alpha
Helix 88	AJ7	Z	61	81	Right-handed alpha
Helix 89	AJ8	Z	86	116	Right-handed alpha
Helix 90	AJ9	Z	120	128	Right-handed alpha
Helix 91	AK1	Z	133	142	Right-handed alpha
Helix 92	AK2	Z	168	204	Right-handed alpha
Helix 93	AK3	Z	234	239	Right-handed alpha
Helix 94	AK4	Z	267	272	Right-handed alpha
Helix 95	AK5	Z	282	286	Right-handed 310
Helix 96	AK6	Z	293	298	Right-handed alpha
Helix 97	AK7	Z	312	323	Right-handed alpha
Helix 98	AK8	Z	324	328	Right-handed 310
Helix 99	AK9	Z	682	687	Right-handed alpha
Helix 100	AL1	Z	885	887	Right-handed 310
Helix 101	AL2	Z	981	991	Right-handed alpha
Helix 102	AL3	Z	1062	1071	Right-handed alpha
Helix 103	AL4	Z	1077	1104	Right-handed alpha
Helix 104	AL5	Z	1109	1121	Right-handed alpha
Helix 105	AL6	Z	1142	1153	Right-handed alpha
Helix 106	AL7	Z	1179	1184	Right-handed alpha
Helix 107	AL8	Z	1187	1199	Right-handed alpha
Helix 108	AL9	Z	1209	1214	Right-handed alpha
Helix 109	AM1	Z	1219	1223	Right-handed 310

There are 51 sheets in PDB entry 8GZG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	13	first strand
Strand 2	A	19	26	anti-parallel
Strand 3	A	196	204	anti-parallel
Strand 4	A	177	186	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	53	first strand
Strand 2	A	139	148	anti-parallel
Strand 3	A	95	99	anti-parallel
Strand 4	A	112	113	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	53	first strand
Strand 2	A	139	148	anti-parallel
Strand 3	A	173	174	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	168	169	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	118	120	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	135	136	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	13	first strand
Strand 2	B	19	28	anti-parallel
Strand 3	B	192	200	anti-parallel
Strand 4	B	173	182	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	99	first strand
Strand 2	B	138	145	anti-parallel
Strand 3	B	50	58	anti-parallel
Strand 4	B	164	165	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	B	119	120	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	149	first strand
Strand 2	B	168	170	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	39	first strand
Strand 2	C	45	49	anti-parallel
Strand 3	C	74	85	anti-parallel
Strand 4	C	91	102	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	112	first strand
Strand 2	C	115	119	anti-parallel
Strand 3	C	366	368	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	308	first strand
Strand 2	C	121	125	anti-parallel
Strand 3	C	383	385	parallel
Strand 4	C	426	428	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	134	first strand
Strand 2	C	142	148	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	160	first strand
Strand 2	C	164	168	anti-parallel
Strand 3	C	175	176	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	434	435	first strand
Strand 2	C	441	442	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	445	447	first strand
Strand 2	C	508	510	anti-parallel
Strand 3	C	472	473	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	490	493	first strand
Strand 2	C	498	501	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	572	573	first strand
Strand 2	C	638	641	anti-parallel
Strand 3	C	624	625	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	579	583	first strand
Strand 2	C	587	591	anti-parallel
Strand 3	C	605	608	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	671	675	first strand
Strand 2	C	830	836	parallel
Strand 3	C	821	823	anti-parallel
Strand 4	C	944	951	anti-parallel
Strand 5	C	654	660	anti-parallel
Strand 6	C	852	854	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	702	703	first strand
Strand 2	C	686	699	anti-parallel
Strand 3	C	802	814	anti-parallel
Strand 4	C	782	786	anti-parallel
Strand 5	C	732	733	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	702	703	first strand
Strand 2	C	686	699	anti-parallel
Strand 3	C	802	814	anti-parallel
Strand 4	C	789	791	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	738	740	first strand
Strand 2	C	774	775	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	743	745	first strand
Strand 2	C	769	771	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	961	963	first strand
Strand 2	D	357	364	anti-parallel
Strand 3	D	472	476	anti-parallel
Strand 4	D	428	431	anti-parallel
Strand 5	D	441	448	anti-parallel
Strand 6	D	372	375	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	961	963	first strand
Strand 2	D	357	364	anti-parallel
Strand 3	D	454	456	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	986	987	first strand
Strand 2	D	352	353	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1052	1057	first strand
Strand 2	D	11	16	anti-parallel
Strand 3	Z	1201	1202	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	113	first strand
Strand 2	D	245	250	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	162	first strand
Strand 2	D	145	149	anti-parallel
Strand 3	D	185	187	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	260	261	first strand
Strand 2	D	267	269	anti-parallel
Strand 3	F	319	320	parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	533	535	first strand
Strand 2	D	556	559	parallel
Strand 3	D	605	609	anti-parallel
Strand 4	D	592	595	anti-parallel
Strand 5	D	585	588	anti-parallel
Strand 6	D	578	579	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	565	567	first strand
Strand 2	Z	3	5	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	220	222	first strand
Strand 2	Z	278	280	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	225	226	first strand
Strand 2	Z	231	233	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	355	356	first strand
Strand 2	Z	384	385	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	363	367	first strand
Strand 2	Z	373	377	anti-parallel
Strand 3	Z	403	405	anti-parallel
Strand 4	Z	420	421	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	433	439	first strand
Strand 2	Z	965	972	anti-parallel
Strand 3	Z	951	952	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	446	449	first strand
Strand 2	Z	472	476	anti-parallel
Strand 3	Z	935	945	anti-parallel
Strand 4	Z	889	893	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	446	449	first strand
Strand 2	Z	472	476	anti-parallel
Strand 3	Z	935	945	anti-parallel
Strand 4	Z	922	924	anti-parallel
Strand 5	Z	905	906	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	479	482	first strand
Strand 2	Z	880	884	anti-parallel
Strand 3	Z	866	869	anti-parallel
Strand 4	Z	496	497	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	487	489	first strand
Strand 2	Z	504	509	anti-parallel
Strand 3	Z	854	861	anti-parallel
Strand 4	Z	836	837	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	487	489	first strand
Strand 2	Z	504	509	anti-parallel
Strand 3	Z	854	861	anti-parallel
Strand 4	Z	840	841	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	515	516	first strand
Strand 2	Z	525	529	anti-parallel
Strand 3	Z	814	821	anti-parallel
Strand 4	Z	801	804	anti-parallel

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There are 7 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	538	539	first strand
Strand 2	Z	550	552	anti-parallel
Strand 3	Z	558	561	anti-parallel
Strand 4	Z	574	578	anti-parallel
Strand 5	Z	778	783	anti-parallel
Strand 6	Z	759	761	anti-parallel
Strand 7	Z	607	608	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	589	594	first strand
Strand 2	Z	614	619	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	646	647	first strand
Strand 2	Z	650	651	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	656	662	first strand
Strand 2	Z	667	674	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	676	677	first strand
Strand 2	Z	724	727	anti-parallel
Strand 3	Z	710	713	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	1139	1141	first strand
Strand 2	Z	1123	1126	anti-parallel
Strand 3	Z	1162	1164	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GZG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GZG