Analysis of interatomic Contacts of Structural Units in PDB entry:
8GZQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GZQ entry

There are 3 chains in PDB entry 8GZQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 7ARG 890
B
 LEU 179LYS 619
S
 A 1 C 67
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 8GZQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 19Right-handed alpha
Helix 2
AA2
A
21 29Right-handed alpha
Helix 3
AA3
A
38 48Right-handed alpha
Helix 4
AA4
A
57 68Right-handed alpha
Helix 5
AA5
A
85 93Right-handed alpha
Helix 6
AA6
A
120 122Right-handed 310
Helix 7
AA7
A
153 169Right-handed alpha
Helix 8
AA8
A
170 172Right-handed 310
Helix 9
AA9
A
186 201Right-handed alpha
Helix 10
AB1
A
226 241Right-handed alpha
Helix 11
AB2
A
272 287Right-handed alpha
Helix 12
AB3
A
321 326Right-handed alpha
Helix 13
AB4
A
327 332Right-handed 310
Helix 14
AB5
A
334 342Right-handed alpha
Helix 15
AB6
A
346 358Right-handed alpha
Helix 16
AB7
A
366 385Right-handed alpha
Helix 17
AB8
A
394 404Right-handed alpha
Helix 18
AB9
A
418 427Right-handed alpha
Helix 19
AC1
A
428 444Right-handed alpha
Helix 20
AC2
A
472 489Right-handed alpha
Helix 21
AC3
A
489 494Right-handed alpha
Helix 22
AC4
A
498 503Right-handed alpha
Helix 23
AC5
A
510 524Right-handed alpha
Helix 24
AC6
A
537 541Right-handed 310
Helix 25
AC7
A
542 551Right-handed alpha
Helix 26
AC8
A
552 556Right-handed 310
Helix 27
AC9
A
557 572Right-handed alpha
Helix 28
AD1
A
604 625Right-handed alpha
Helix 29
AD2
A
629 635Right-handed alpha
Helix 30
AD3
A
639 656Right-handed alpha
Helix 31
AD4
A
671 676Right-handed 310
Helix 32
AD5
A
677 685Right-handed alpha
Helix 33
AD6
A
730 738Right-handed alpha
Helix 34
AD7
A
747 766Right-handed alpha
Helix 35
AD8
A
769 782Right-handed alpha
Helix 36
AD9
A
808 818Right-handed alpha
Helix 37
AE1
A
840 847Right-handed alpha
Helix 38
AE2
A
853 875Right-handed alpha
Helix 39
AE3
A
882 886Right-handed 310
Helix 40
AE4
B
180 185Right-handed 310
Helix 41
AE5
B
203 215Right-handed alpha
Helix 42
AE6
B
225 236Right-handed alpha
Helix 43
AE7
B
263 272Right-handed alpha
Helix 44
AE8
B
291 307Right-handed alpha
Helix 45
AE9
B
349 354Right-handed alpha
Helix 46
AF1
B
365 379Right-handed alpha
Helix 47
AF2
B
390 400Right-handed alpha
Helix 48
AF3
B
409 414Right-handed 310
Helix 49
AF4
B
451 461Right-handed alpha
Helix 50
AF5
B
482 486Right-handed 310
Helix 51
AF6
B
487 499Right-handed alpha
Helix 52
AF7
B
527 540Right-handed alpha
Helix 53
AF8
B
544 554Right-handed alpha
Helix 54
AF9
B
598 603Right-handed 310
Helix 55
AG1
B
604 616Right-handed alpha
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There are 8 sheets in PDB entry 8GZQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
250 252parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 127first strand
Strand 2
A
97 103parallel
Strand 3
A
75 80parallel
Strand 4
A
142 145parallel
Strand 5
A
176 181parallel
Strand 6
A
217 220anti-parallel
Strand 7
A
203 205anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 309first strand
Strand 2
A
586 594anti-parallel
Strand 3
A
575 583anti-parallel
Strand 4
A
451 452parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
658 661first strand
Strand 2
A
664 667anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
712 717first strand
Strand 2
A
723 728anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 192first strand
Strand 2
B
311 315parallel
Strand 3
B
281 285parallel
Strand 4
B
219 223parallel
Strand 5
B
258 262parallel
Strand 6
B
242 243parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
334 337first strand
Strand 2
B
472 475parallel
Strand 3
B
422 425parallel
Strand 4
B
359 362parallel
Strand 5
B
405 408parallel
Strand 6
B
383 385parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
432 435first strand
Strand 2
B
441 444anti-parallel
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