Analysis of interatomic Contacts of Structural Units in PDB entry:
8GZR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GZR entry

There are 3 chains in PDB entry 8GZR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 6SER 885
B
 PRO 177LYS 619
C
 A 1 U 40
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 62 helices in PDB entry 8GZR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 19Right-handed alpha
Helix 2
AA2
A
21 29Right-handed alpha
Helix 3
AA3
A
38 47Right-handed alpha
Helix 4
AA4
A
57 68Right-handed alpha
Helix 5
AA5
A
85 93Right-handed alpha
Helix 6
AA6
A
120 122Right-handed 310
Helix 7
AA7
A
153 169Right-handed alpha
Helix 8
AA8
A
170 172Right-handed 310
Helix 9
AA9
A
186 201Right-handed alpha
Helix 10
AB1
A
226 244Right-handed alpha
Helix 11
AB2
A
276 287Right-handed alpha
Helix 12
AB3
A
322 327Right-handed alpha
Helix 13
AB4
A
328 333Right-handed 310
Helix 14
AB5
A
334 339Right-handed alpha
Helix 15
AB6
A
346 357Right-handed alpha
Helix 16
AB7
A
366 385Right-handed alpha
Helix 17
AB8
A
394 402Right-handed alpha
Helix 18
AB9
A
412 416Right-handed 310
Helix 19
AC1
A
420 427Right-handed alpha
Helix 20
AC2
A
428 443Right-handed alpha
Helix 21
AC3
A
477 489Right-handed alpha
Helix 22
AC4
A
489 494Right-handed alpha
Helix 23
AC5
A
498 503Right-handed alpha
Helix 24
AC6
A
510 512Right-handed 310
Helix 25
AC7
A
513 523Right-handed alpha
Helix 26
AC8
A
536 540Right-handed 310
Helix 27
AC9
A
542 551Right-handed alpha
Helix 28
AD1
A
552 556Right-handed 310
Helix 29
AD2
A
557 571Right-handed alpha
Helix 30
AD3
A
604 625Right-handed alpha
Helix 31
AD4
A
629 634Right-handed alpha
Helix 32
AD5
A
639 656Right-handed alpha
Helix 33
AD6
A
671 677Right-handed 310
Helix 34
AD7
A
678 684Right-handed alpha
Helix 35
AD8
A
702 706Right-handed 310
Helix 36
AD9
A
730 739Right-handed alpha
Helix 37
AE1
A
748 750Right-handed 310
Helix 38
AE2
A
751 766Right-handed alpha
Helix 39
AE3
A
769 782Right-handed alpha
Helix 40
AE4
A
805 818Right-handed alpha
Helix 41
AE5
A
832 836Right-handed 310
Helix 42
AE6
A
840 847Right-handed alpha
Helix 43
AE7
A
853 862Right-handed alpha
Helix 44
AE8
A
862 875Right-handed alpha
Helix 45
AE9
B
180 185Right-handed 310
Helix 46
AF1
B
203 215Right-handed alpha
Helix 47
AF2
B
225 236Right-handed alpha
Helix 48
AF3
B
263 272Right-handed alpha
Helix 49
AF4
B
291 307Right-handed alpha
Helix 50
AF5
B
349 354Right-handed alpha
Helix 51
AF6
B
365 379Right-handed alpha
Helix 52
AF7
B
390 399Right-handed alpha
Helix 53
AF8
B
410 413Right-handed 310
Helix 54
AF9
B
451 460Right-handed alpha
Helix 55
AG1
B
486 497Right-handed alpha
Helix 56
AG2
B
510 514Right-handed 310
Helix 57
AG3
B
516 521Right-handed alpha
Helix 58
AG4
B
527 540Right-handed alpha
Helix 59
AG5
B
544 553Right-handed alpha
Helix 60
AG6
B
561 565Right-handed 310
Helix 61
AG7
B
598 602Right-handed 310
Helix 62
AG8
B
604 616Right-handed alpha
Back to top of page

There are 13 sheets in PDB entry 8GZR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
250 252parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 127first strand
Strand 2
A
97 103parallel
Strand 3
A
75 80parallel
Strand 4
A
142 145parallel
Strand 5
A
176 181parallel
Strand 6
A
217 220anti-parallel
Strand 7
A
203 205anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 309first strand
Strand 2
A
586 594anti-parallel
Strand 3
A
575 583anti-parallel
Strand 4
A
451 455parallel
Strand 5
A
472 475anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
740 742first strand
Strand 2
A
318 321anti-parallel
Strand 3
A
745 747parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 342first strand
Strand 2
A
459 461anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
658 661first strand
Strand 2
A
664 667anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
712 717first strand
Strand 2
A
723 728anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
787 789first strand
Strand 2
A
795 797anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 192first strand
Strand 2
B
311 315parallel
Strand 3
B
281 285parallel
Strand 4
B
219 223parallel
Strand 5
B
258 262parallel
Strand 6
B
242 243parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 336first strand
Strand 2
B
471 475parallel
Strand 3
B
422 425parallel
Strand 4
B
359 362parallel
Strand 5
B
405 408parallel
Strand 6
B
383 386parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
428 435first strand
Strand 2
B
441 449anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
574 575first strand
Strand 2
B
578 579anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
581 583first strand
Strand 2
B
589 591anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il