Analysis of interatomic Contacts of Structural Units in PDB entry:
8GZV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GZV entry

There are 2 chains in PDB entry 8GZV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 10GLY 316
B
 SER 0THR 90
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8GZV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 33Right-handed alpha
Helix 2
AA2
A
45 51Right-handed alpha
Helix 3
AA3
A
73 84Right-handed alpha
Helix 4
AA4
A
84 93Right-handed alpha
Helix 5
AA5
A
107 123Right-handed alpha
Helix 6
AA6
A
135 138Right-handed 310
Helix 7
AA7
A
139 155Right-handed alpha
Helix 8
AA8
A
165 169Right-handed alpha
Helix 9
AA9
A
170 172Right-handed 310
Helix 10
AB1
A
177 202Right-handed alpha
Helix 11
AB2
A
209 218Right-handed alpha
Helix 12
AB3
A
234 245Right-handed alpha
Helix 13
AB4
A
246 250Right-handed 310
Helix 14
AB5
A
253 257Right-handed 310
Helix 15
AB6
A
271 286Right-handed alpha
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There are 3 sheets in PDB entry 8GZV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
37 43parallel
Strand 3
A
13 18parallel
Strand 4
A
97 103parallel
Strand 5
A
126 133parallel
Strand 6
A
159 164parallel
Strand 7
A
221 231parallel
Strand 8
A
305 313anti-parallel
Strand 9
A
259 266anti-parallel
Strand 10
A
291 298parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 13first strand
Strand 2
B
18 22anti-parallel
Strand 3
B
56 59anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 51first strand
Strand 2
B
31 38anti-parallel
Strand 3
B
67 75anti-parallel
Strand 4
B
84 89anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il