Analysis of interatomic Contacts of Structural Units in PDB entry:
8GZW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GZW entry

There are 6 chains in PDB entry 8GZW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 10GLY 316
B
 SER 0THR 90
C
 MET 10GLY 316
D
 SER 0THR 90
E
 MET 10GLY 316
F
 VAL 1THR 90
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8GZW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 33Right-handed alpha
Helix 2
AA2
A
74 82Right-handed alpha
Helix 3
AA3
A
84 93Right-handed alpha
Helix 4
AA4
A
107 123Right-handed alpha
Helix 5
AA5
A
139 155Right-handed alpha
Helix 6
AA6
A
166 171Right-handed 310
Helix 7
AA7
A
177 202Right-handed alpha
Helix 8
AA8
A
209 218Right-handed alpha
Helix 9
AA9
A
234 246Right-handed alpha
Helix 10
AB1
A
247 250Right-handed 310
Helix 11
AB2
A
253 257Right-handed 310
Helix 12
AB3
A
271 286Right-handed alpha
Helix 13
AB4
C
19 33Right-handed alpha
Helix 14
AB5
C
45 52Right-handed alpha
Helix 15
AB6
C
73 84Right-handed alpha
Helix 16
AB7
C
84 93Right-handed alpha
Helix 17
AB8
C
107 123Right-handed alpha
Helix 18
AB9
C
135 138Right-handed 310
Helix 19
AC1
C
139 155Right-handed alpha
Helix 20
AC2
C
165 169Right-handed alpha
Helix 21
AC3
C
170 172Right-handed 310
Helix 22
AC4
C
177 202Right-handed alpha
Helix 23
AC5
C
209 218Right-handed alpha
Helix 24
AC6
C
234 245Right-handed alpha
Helix 25
AC7
C
246 250Right-handed 310
Helix 26
AC8
C
253 257Right-handed 310
Helix 27
AC9
C
271 286Right-handed alpha
Helix 28
AD1
E
19 33Right-handed alpha
Helix 29
AD2
E
45 50Right-handed alpha
Helix 30
AD3
E
61 66Right-handed alpha
Helix 31
AD4
E
73 83Right-handed alpha
Helix 32
AD5
E
84 93Right-handed alpha
Helix 33
AD6
E
107 123Right-handed alpha
Helix 34
AD7
E
135 138Right-handed 310
Helix 35
AD8
E
139 155Right-handed alpha
Helix 36
AD9
E
165 169Right-handed alpha
Helix 37
AE1
E
170 172Right-handed 310
Helix 38
AE2
E
177 202Right-handed alpha
Helix 39
AE3
E
209 218Right-handed alpha
Helix 40
AE4
E
234 245Right-handed alpha
Helix 41
AE5
E
246 250Right-handed 310
Helix 42
AE6
E
253 255Right-handed 310
Helix 43
AE7
E
271 286Right-handed alpha
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There are 9 sheets in PDB entry 8GZW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
38 43parallel
Strand 3
A
13 18parallel
Strand 4
A
97 103parallel
Strand 5
A
126 133parallel
Strand 6
A
159 164parallel
Strand 7
A
221 231parallel
Strand 8
A
305 313anti-parallel
Strand 9
A
259 266anti-parallel
Strand 10
A
291 298parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 13first strand
Strand 2
B
18 22anti-parallel
Strand 3
B
56 59anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 51first strand
Strand 2
B
31 38anti-parallel
Strand 3
B
68 75anti-parallel
Strand 4
B
84 88anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 59first strand
Strand 2
C
38 43parallel
Strand 3
C
13 18parallel
Strand 4
C
97 103parallel
Strand 5
C
126 133parallel
Strand 6
C
159 164parallel
Strand 7
C
221 231parallel
Strand 8
C
305 313anti-parallel
Strand 9
C
259 266anti-parallel
Strand 10
C
291 298parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 13first strand
Strand 2
D
18 22anti-parallel
Strand 3
D
56 59anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
46 51first strand
Strand 2
D
29 38anti-parallel
Strand 3
D
67 76anti-parallel
Strand 4
D
84 89anti-parallel
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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
56 59first strand
Strand 2
E
38 43parallel
Strand 3
E
13 18parallel
Strand 4
E
97 103parallel
Strand 5
E
126 133parallel
Strand 6
E
159 164parallel
Strand 7
E
221 231parallel
Strand 8
E
305 315anti-parallel
Strand 9
E
257 266anti-parallel
Strand 10
E
291 298parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
8 14first strand
Strand 2
F
17 22anti-parallel
Strand 3
F
56 59anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
46 51first strand
Strand 2
F
31 38anti-parallel
Strand 3
F
67 75anti-parallel
Strand 4
F
84 89anti-parallel
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