Analysis of interatomic Contacts of Structural Units in PDB entry:
8H09


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H09 entry

There are 2 chains in PDB entry 8H09 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 30PHE 418
B
 SER 31PHE 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 8H09. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 40Right-handed alpha
Helix 2
AA2
A
96 109Right-handed alpha
Helix 3
AA3
A
158 164Right-handed alpha
Helix 4
AA4
A
184 193Right-handed alpha
Helix 5
AA5
A
216 228Right-handed alpha
Helix 6
AA6
A
229 231Right-handed 310
Helix 7
AA7
A
235 237Right-handed 310
Helix 8
AA8
A
246 253Right-handed alpha
Helix 9
AA9
A
256 274Right-handed alpha
Helix 10
AB1
A
286 296Right-handed 310
Helix 11
AB2
A
297 325Right-handed alpha
Helix 12
AB3
A
333 344Right-handed alpha
Helix 13
AB4
A
345 349Right-handed 310
Helix 14
AB5
A
364 370Right-handed 310
Helix 15
AB6
A
375 382Right-handed alpha
Helix 16
AB7
A
383 386Right-handed 310
Helix 17
AB8
A
395 414Right-handed alpha
Helix 18
AB9
B
32 40Right-handed alpha
Helix 19
AC1
B
96 109Right-handed alpha
Helix 20
AC2
B
158 164Right-handed alpha
Helix 21
AC3
B
184 193Right-handed alpha
Helix 22
AC4
B
216 230Right-handed alpha
Helix 23
AC5
B
235 237Right-handed 310
Helix 24
AC6
B
246 252Right-handed alpha
Helix 25
AC7
B
256 274Right-handed alpha
Helix 26
AC8
B
286 296Right-handed 310
Helix 27
AC9
B
297 325Right-handed alpha
Helix 28
AD1
B
333 344Right-handed alpha
Helix 29
AD2
B
345 349Right-handed 310
Helix 30
AD3
B
364 370Right-handed 310
Helix 31
AD4
B
375 382Right-handed alpha
Helix 32
AD5
B
383 386Right-handed 310
Helix 33
AD6
B
395 410Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8H09. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
43 52anti-parallel
Strand 3
A
118 122anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
43 52anti-parallel
Strand 3
A
76 82anti-parallel
Strand 4
A
90 93anti-parallel
Strand 5
A
132 134parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 199first strand
Strand 2
A
146 150parallel
Strand 3
A
239 243parallel
Strand 4
A
278 282parallel
Strand 5
A
328 332parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 66first strand
Strand 2
B
43 52anti-parallel
Strand 3
B
118 122anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 66first strand
Strand 2
B
43 52anti-parallel
Strand 3
B
76 81anti-parallel
Strand 4
B
91 93anti-parallel
Strand 5
B
132 134parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 199first strand
Strand 2
B
146 151parallel
Strand 3
B
239 244parallel
Strand 4
B
278 282parallel
Strand 5
B
328 332parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il