Analysis of interatomic Contacts of Structural Units in PDB entry:
8H0I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H0I entry

There are 12 chains in PDB entry 8H0I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -3	LEU 362
B	GLY -3	LEU 362
C	MET 1	LYS 176
D	GLN 8	ARG 151
E	MET 1	LYS 176
F	GLU 15	ARG 151
G	MET 1	LYS 176
H	GLN 8	ARG 151
I	MET 1	LYS 176
J	GLU 15	ARG 151
X	C 1	A 19
Y	C 1	A 19

There are 58 helices in PDB entry 8H0I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	10	Right-handed alpha
Helix 2	AA2	A	53	66	Right-handed alpha
Helix 3	AA3	A	84	98	Right-handed alpha
Helix 4	AA4	A	115	128	Right-handed alpha
Helix 5	AA5	A	136	148	Right-handed alpha
Helix 6	AA6	A	160	177	Right-handed alpha
Helix 7	AA7	A	181	189	Right-handed alpha
Helix 8	AA8	A	240	249	Right-handed alpha
Helix 9	AA9	A	250	253	Right-handed 310
Helix 10	AB1	A	271	285	Right-handed alpha
Helix 11	AB2	A	306	315	Right-handed alpha
Helix 12	AB3	A	322	334	Right-handed alpha
Helix 13	AB4	A	347	362	Right-handed alpha
Helix 14	AB5	B	2	10	Right-handed alpha
Helix 15	AB6	B	53	66	Right-handed alpha
Helix 16	AB7	B	84	98	Right-handed alpha
Helix 17	AB8	B	115	128	Right-handed alpha
Helix 18	AB9	B	136	148	Right-handed alpha
Helix 19	AC1	B	160	177	Right-handed alpha
Helix 20	AC2	B	181	189	Right-handed alpha
Helix 21	AC3	B	240	249	Right-handed alpha
Helix 22	AC4	B	250	253	Right-handed 310
Helix 23	AC5	B	271	285	Right-handed alpha
Helix 24	AC6	B	306	315	Right-handed alpha
Helix 25	AC7	B	322	334	Right-handed alpha
Helix 26	AC8	B	347	362	Right-handed alpha
Helix 27	AC9	C	14	31	Right-handed alpha
Helix 28	AD1	C	99	111	Right-handed alpha
Helix 29	AD2	C	165	171	Right-handed alpha
Helix 30	AD3	D	9	15	Right-handed alpha
Helix 31	AD4	D	15	24	Right-handed alpha
Helix 32	AD5	D	36	51	Right-handed alpha
Helix 33	AD6	D	72	74	Right-handed 310
Helix 34	AD7	D	140	151	Right-handed alpha
Helix 35	AD8	E	14	31	Right-handed alpha
Helix 36	AD9	E	42	46	Right-handed 310
Helix 37	AE1	E	99	111	Right-handed alpha
Helix 38	AE2	E	165	171	Right-handed alpha
Helix 39	AE3	F	16	21	Right-handed alpha
Helix 40	AE4	F	36	51	Right-handed alpha
Helix 41	AE5	F	70	74	Right-handed 310
Helix 42	AE6	F	139	150	Right-handed alpha
Helix 43	AE7	G	14	31	Right-handed alpha
Helix 44	AE8	G	99	111	Right-handed alpha
Helix 45	AE9	G	165	171	Right-handed alpha
Helix 46	AF1	H	9	15	Right-handed alpha
Helix 47	AF2	H	15	24	Right-handed alpha
Helix 48	AF3	H	36	51	Right-handed alpha
Helix 49	AF4	H	72	74	Right-handed 310
Helix 50	AF5	H	140	151	Right-handed alpha
Helix 51	AF6	I	14	31	Right-handed alpha
Helix 52	AF7	I	42	46	Right-handed 310
Helix 53	AF8	I	99	111	Right-handed alpha
Helix 54	AF9	I	165	171	Right-handed alpha
Helix 55	AG1	J	16	21	Right-handed alpha
Helix 56	AG2	J	36	51	Right-handed alpha
Helix 57	AG3	J	70	74	Right-handed 310
Helix 58	AG4	J	139	150	Right-handed alpha

There are 15 sheets in PDB entry 8H0I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	47	first strand
Strand 2	A	23	32	anti-parallel
Strand 3	A	73	81	anti-parallel
Strand 4	A	101	109	parallel
Strand 5	A	131	134	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	225	first strand
Strand 2	A	203	210	anti-parallel
Strand 3	A	260	266	anti-parallel
Strand 4	A	288	294	parallel
Strand 5	A	317	320	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	47	first strand
Strand 2	B	23	32	anti-parallel
Strand 3	B	73	81	anti-parallel
Strand 4	B	101	109	parallel
Strand 5	B	131	134	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	225	first strand
Strand 2	B	203	210	anti-parallel
Strand 3	B	260	266	anti-parallel
Strand 4	B	288	294	parallel
Strand 5	B	317	320	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	41	first strand
Strand 2	C	53	59	anti-parallel
Strand 3	C	62	70	anti-parallel
Strand 4	C	83	90	anti-parallel
Strand 5	C	95	97	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	41	first strand
Strand 2	C	53	59	anti-parallel
Strand 3	C	62	70	anti-parallel
Strand 4	C	83	90	anti-parallel
Strand 5	C	5	12	anti-parallel
Strand 6	D	64	70	anti-parallel
Strand 7	D	55	59	anti-parallel
Strand 8	D	27	28	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	87	first strand
Strand 2	D	94	103	anti-parallel
Strand 3	D	106	115	anti-parallel
Strand 4	D	120	127	anti-parallel

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There are 12 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	41	first strand
Strand 2	E	51	58	anti-parallel
Strand 3	E	63	72	anti-parallel
Strand 4	E	82	91	anti-parallel
Strand 5	E	6	13	anti-parallel
Strand 6	F	64	69	anti-parallel
Strand 7	F	55	59	anti-parallel
Strand 8	F	26	29	anti-parallel
Strand 9	F	120	127	anti-parallel
Strand 10	F	106	115	anti-parallel
Strand 11	F	94	103	anti-parallel
Strand 12	F	85	87	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	41	first strand
Strand 2	E	51	58	anti-parallel
Strand 3	E	63	72	anti-parallel
Strand 4	E	82	91	anti-parallel
Strand 5	E	94	97	anti-parallel
Strand 6	F	94	103	parallel
Strand 7	F	85	87	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	41	first strand
Strand 2	G	53	59	anti-parallel
Strand 3	G	62	70	anti-parallel
Strand 4	G	83	90	anti-parallel
Strand 5	G	95	97	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	41	first strand
Strand 2	G	53	59	anti-parallel
Strand 3	G	62	70	anti-parallel
Strand 4	G	83	90	anti-parallel
Strand 5	G	5	12	anti-parallel
Strand 6	H	64	70	anti-parallel
Strand 7	H	55	59	anti-parallel
Strand 8	H	27	28	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	85	87	first strand
Strand 2	H	94	103	anti-parallel
Strand 3	H	106	115	anti-parallel
Strand 4	H	120	127	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	6	9	first strand
Strand 2	J	65	69	anti-parallel
Strand 3	J	55	59	anti-parallel
Strand 4	J	26	29	anti-parallel
Strand 5	J	120	127	anti-parallel
Strand 6	J	106	115	anti-parallel
Strand 7	J	94	103	anti-parallel
Strand 8	J	85	87	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	13	first strand
Strand 2	I	82	91	anti-parallel
Strand 3	I	63	72	anti-parallel
Strand 4	I	51	58	anti-parallel
Strand 5	I	39	41	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	13	first strand
Strand 2	I	82	91	anti-parallel
Strand 3	I	94	97	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H0I

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H0I