Analysis of interatomic Contacts of Structural Units in PDB entry:
8H0M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H0M entry

There is 1 chain in PDB entry 8H0M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -12HIS 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 8H0M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 22Right-handed alpha
Helix 2
AA2
A
55 60Right-handed 310
Helix 3
AA3
A
62 67Right-handed 310
Helix 4
AA4
A
96 110Right-handed alpha
Helix 5
AA5
A
122 130Right-handed alpha
Helix 6
AA6
A
140 144Right-handed 310
Helix 7
AA7
A
147 151Right-handed 310
Helix 8
AA8
A
204 211Right-handed alpha
Helix 9
AA9
A
217 229Right-handed alpha
Helix 10
AB1
A
229 234Right-handed alpha
Helix 11
AB2
A
266 269Right-handed 310
Helix 12
AB3
A
273 277Right-handed 310
Helix 13
AB4
A
278 296Right-handed alpha
Helix 14
AB5
A
299 331Right-handed alpha
Helix 15
AB6
A
332 336Right-handed 310
Helix 16
AB7
A
339 349Right-handed alpha
Helix 17
AB8
A
356 370Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 8H0M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 115first strand
Strand 2
A
26 30parallel
Strand 3
A
1 5parallel
Strand 4
A
132 135parallel
Strand 5
A
262 264parallel
Strand 6
A
258 259anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
81 95anti-parallel
Strand 3
A
69 78anti-parallel
Strand 4
A
173 179parallel
Strand 5
A
184 191anti-parallel
Strand 6
A
197 203anti-parallel
Strand 7
A
153 166anti-parallel
Strand 8
A
238 240anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
81 95anti-parallel
Strand 3
A
69 78anti-parallel
Strand 4
A
173 179parallel
Strand 5
A
184 191anti-parallel
Strand 6
A
197 203anti-parallel
Strand 7
A
153 166anti-parallel
Strand 8
A
247 253anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il