Analysis of interatomic Contacts of Structural Units in PDB entry:
8H0Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H0Q entry

There are 6 chains in PDB entry 8H0Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	VAL 42	GLN 341
L	ASN 19	MET 27
A	LEU 11	VAL 359
B	GLU 8	ASN 345
E	VAL 1	LEU 247
G	THR 5	ASN 58

There are 24 helices in PDB entry 8H0Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	42	68	Right-handed alpha
Helix 2	AA2	R	73	102	Right-handed alpha
Helix 3	AA3	R	111	142	Right-handed alpha
Helix 4	AA4	R	153	178	Right-handed alpha
Helix 5	AA5	R	204	219	Right-handed alpha
Helix 6	AA6	R	219	241	Right-handed alpha
Helix 7	AA7	R	249	290	Right-handed alpha
Helix 8	AA8	R	297	318	Right-handed alpha
Helix 9	AA9	R	320	326	Right-handed alpha
Helix 10	AB1	R	329	339	Right-handed alpha
Helix 11	AB2	A	12	38	Right-handed alpha
Helix 12	AB3	A	51	59	Right-handed alpha
Helix 13	AB4	A	215	221	Right-handed 310
Helix 14	AB5	A	247	260	Right-handed alpha
Helix 15	AB6	A	261	265	Right-handed 310
Helix 16	AB7	A	275	284	Right-handed alpha
Helix 17	AB8	A	292	297	Right-handed 310
Helix 18	AB9	A	308	318	Right-handed alpha
Helix 19	AC1	A	335	356	Right-handed alpha
Helix 20	AC2	B	9	30	Right-handed alpha
Helix 21	AC3	B	34	39	Right-handed alpha
Helix 22	AC4	G	6	23	Right-handed alpha
Helix 23	AC5	G	28	43	Right-handed alpha
Helix 24	AC6	G	54	58	Right-handed 310

There are 14 sheets in PDB entry 8H0Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	180	181	first strand
Strand 2	R	196	197	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	196	first strand
Strand 2	A	199	206	anti-parallel
Strand 3	A	39	46	parallel
Strand 4	A	225	231	parallel
Strand 5	A	268	274	parallel
Strand 6	A	325	328	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	56	first strand
Strand 2	B	341	344	anti-parallel
Strand 3	B	332	336	anti-parallel
Strand 4	B	320	325	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	67	first strand
Strand 2	B	74	79	anti-parallel
Strand 3	B	83	88	anti-parallel
Strand 4	B	94	99	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	110	first strand
Strand 2	B	116	121	anti-parallel
Strand 3	B	125	130	anti-parallel
Strand 4	B	140	145	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	165	first strand
Strand 2	B	171	175	anti-parallel
Strand 3	B	181	184	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	197	first strand
Strand 2	B	203	207	anti-parallel
Strand 3	B	213	217	anti-parallel
Strand 4	B	225	227	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	239	first strand
Strand 2	B	245	250	anti-parallel
Strand 3	B	255	259	anti-parallel
Strand 4	B	265	269	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	283	first strand
Strand 2	B	289	294	anti-parallel
Strand 3	B	299	303	anti-parallel
Strand 4	B	309	313	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	6	first strand
Strand 2	E	16	24	anti-parallel
Strand 3	E	77	83	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	11	first strand
Strand 2	E	116	118	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	59	first strand
Strand 2	E	44	50	anti-parallel
Strand 3	E	34	38	anti-parallel
Strand 4	E	92	96	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	155	160	first strand
Strand 2	E	211	216	anti-parallel
Strand 3	E	203	207	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	176	178	first strand
Strand 2	E	186	189	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H0Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H0Q