Analysis of interatomic Contacts of Structural Units in PDB entry:
8H13

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H13 entry

There are 3 chains in PDB entry 8H13 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 31	LEU 1123
B	THR 31	LEU 1123
C	THR 31	LEU 1123

There are 51 helices in PDB entry 8H13. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	281	291	Right-handed alpha
Helix 2	AA2	A	325	330	Right-handed alpha
Helix 3	AA3	A	371	376	Right-handed 310
Helix 4	AA4	A	391	397	Right-handed 310
Helix 5	AA5	A	403	410	Right-handed alpha
Helix 6	AA6	A	603	612	Right-handed alpha
Helix 7	AA7	A	719	725	Right-handed alpha
Helix 8	AA8	A	728	738	Right-handed alpha
Helix 9	AA9	A	741	765	Right-handed alpha
Helix 10	AB1	A	798	806	Right-handed alpha
Helix 11	AB2	A	848	867	Right-handed alpha
Helix 12	AB3	A	879	892	Right-handed alpha
Helix 13	AB4	A	894	901	Right-handed alpha
Helix 14	AB5	A	901	923	Right-handed alpha
Helix 15	AB6	A	927	948	Right-handed alpha
Helix 16	AB7	A	958	964	Right-handed alpha
Helix 17	AB8	A	970	1015	Right-handed alpha
Helix 18	AB9	B	281	291	Right-handed alpha
Helix 19	AC1	B	325	330	Right-handed alpha
Helix 20	AC2	B	371	376	Right-handed 310
Helix 21	AC3	B	391	397	Right-handed 310
Helix 22	AC4	B	403	410	Right-handed alpha
Helix 23	AC5	B	603	612	Right-handed alpha
Helix 24	AC6	B	719	725	Right-handed alpha
Helix 25	AC7	B	728	738	Right-handed alpha
Helix 26	AC8	B	741	765	Right-handed alpha
Helix 27	AC9	B	798	806	Right-handed alpha
Helix 28	AD1	B	848	867	Right-handed alpha
Helix 29	AD2	B	879	892	Right-handed alpha
Helix 30	AD3	B	894	901	Right-handed alpha
Helix 31	AD4	B	901	923	Right-handed alpha
Helix 32	AD5	B	927	948	Right-handed alpha
Helix 33	AD6	B	958	964	Right-handed alpha
Helix 34	AD7	B	970	1015	Right-handed alpha
Helix 35	AD8	C	281	291	Right-handed alpha
Helix 36	AD9	C	325	330	Right-handed alpha
Helix 37	AE1	C	371	376	Right-handed 310
Helix 38	AE2	C	391	397	Right-handed 310
Helix 39	AE3	C	403	410	Right-handed alpha
Helix 40	AE4	C	603	612	Right-handed alpha
Helix 41	AE5	C	719	725	Right-handed alpha
Helix 42	AE6	C	728	738	Right-handed alpha
Helix 43	AE7	C	741	765	Right-handed alpha
Helix 44	AE8	C	798	806	Right-handed alpha
Helix 45	AE9	C	848	867	Right-handed alpha
Helix 46	AF1	C	879	892	Right-handed alpha
Helix 47	AF2	C	894	901	Right-handed alpha
Helix 48	AF3	C	901	923	Right-handed alpha
Helix 49	AF4	C	927	948	Right-handed alpha
Helix 50	AF5	C	958	964	Right-handed alpha
Helix 51	AF6	C	970	1015	Right-handed alpha

There are 54 sheets in PDB entry 8H13. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	35	first strand
Strand 2	A	64	69	anti-parallel
Strand 3	A	252	256	anti-parallel
Strand 4	A	87	91	anti-parallel
Strand 5	A	181	190	anti-parallel
Strand 6	A	193	198	anti-parallel
Strand 7	A	215	222	anti-parallel
Strand 8	A	40	41	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	35	first strand
Strand 2	A	64	69	anti-parallel
Strand 3	A	252	256	anti-parallel
Strand 4	A	87	91	anti-parallel
Strand 5	A	181	190	anti-parallel
Strand 6	A	201	202	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	C	551	553	parallel
Strand 3	C	559	563	anti-parallel
Strand 4	C	570	574	anti-parallel
Strand 5	C	532	539	anti-parallel
Strand 6	C	525	529	anti-parallel
Strand 7	C	313	315	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	54	first strand
Strand 2	A	263	265	anti-parallel
Strand 3	A	274	275	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	59	first strand
Strand 2	A	258	259	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	165	first strand
Strand 2	A	123	124	anti-parallel
Strand 3	A	114	118	anti-parallel
Strand 4	A	98	103	anti-parallel
Strand 5	A	235	236	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	306	first strand
Strand 2	A	578	585	anti-parallel
Strand 3	A	595	599	anti-parallel
Strand 4	A	634	637	anti-parallel
Strand 5	A	628	630	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	315	first strand
Strand 2	A	525	529	parallel
Strand 3	A	532	539	anti-parallel
Strand 4	A	570	574	anti-parallel
Strand 5	A	559	563	anti-parallel
Strand 6	A	551	553	anti-parallel
Strand 7	B	46	47	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	345	first strand
Strand 2	A	382	385	anti-parallel
Strand 3	A	494	500	anti-parallel
Strand 4	A	419	424	anti-parallel
Strand 5	A	365	366	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	345	first strand
Strand 2	A	382	385	anti-parallel
Strand 3	A	494	500	anti-parallel
Strand 4	A	388	389	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	510	511	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	441	first strand
Strand 2	A	478	480	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	640	641	first strand
Strand 2	A	675	678	parallel
Strand 3	A	656	659	anti-parallel
Strand 4	A	650	653	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	683	684	first strand
Strand 2	B	769	770	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	693	710	first strand
Strand 2	A	1041	1060	anti-parallel
Strand 3	A	1029	1038	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	693	710	first strand
Strand 2	A	1041	1060	anti-parallel
Strand 3	A	1076	1078	anti-parallel
Strand 4	A	1085	1087	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	717	718	first strand
Strand 2	A	840	841	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	769	770	first strand
Strand 2	C	683	684	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	778	779	first strand
Strand 2	A	782	783	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1102	1104	first strand
Strand 2	A	1069	1072	anti-parallel
Strand 3	A	1062	1064	anti-parallel
Strand 4	A	1114	1116	parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	35	first strand
Strand 2	B	64	69	anti-parallel
Strand 3	B	252	256	anti-parallel
Strand 4	B	87	91	anti-parallel
Strand 5	B	181	190	anti-parallel
Strand 6	B	193	198	anti-parallel
Strand 7	B	215	222	anti-parallel
Strand 8	B	40	41	parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	35	first strand
Strand 2	B	64	69	anti-parallel
Strand 3	B	252	256	anti-parallel
Strand 4	B	87	91	anti-parallel
Strand 5	B	181	190	anti-parallel
Strand 6	B	201	202	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	54	first strand
Strand 2	B	263	265	anti-parallel
Strand 3	B	274	275	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	258	259	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	165	first strand
Strand 2	B	123	124	anti-parallel
Strand 3	B	114	118	anti-parallel
Strand 4	B	98	103	anti-parallel
Strand 5	B	235	236	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	306	first strand
Strand 2	B	578	585	anti-parallel
Strand 3	B	595	599	anti-parallel
Strand 4	B	634	637	anti-parallel
Strand 5	B	628	630	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	315	first strand
Strand 2	B	525	529	parallel
Strand 3	B	532	539	anti-parallel
Strand 4	B	570	574	anti-parallel
Strand 5	B	559	563	anti-parallel
Strand 6	B	551	553	anti-parallel
Strand 7	C	46	47	parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	345	first strand
Strand 2	B	382	385	anti-parallel
Strand 3	B	494	500	anti-parallel
Strand 4	B	419	424	anti-parallel
Strand 5	B	365	366	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	345	first strand
Strand 2	B	382	385	anti-parallel
Strand 3	B	494	500	anti-parallel
Strand 4	B	388	389	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	349	first strand
Strand 2	B	510	511	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	441	first strand
Strand 2	B	478	480	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	640	641	first strand
Strand 2	B	675	678	parallel
Strand 3	B	656	659	anti-parallel
Strand 4	B	650	653	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	683	684	first strand
Strand 2	C	769	770	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	693	710	first strand
Strand 2	B	1041	1060	anti-parallel
Strand 3	B	1029	1038	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	693	710	first strand
Strand 2	B	1041	1060	anti-parallel
Strand 3	B	1076	1078	anti-parallel
Strand 4	B	1085	1087	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	717	718	first strand
Strand 2	B	840	841	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	778	779	first strand
Strand 2	B	782	783	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1102	1104	first strand
Strand 2	B	1069	1072	anti-parallel
Strand 3	B	1062	1064	anti-parallel
Strand 4	B	1114	1116	parallel

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There are 8 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	35	first strand
Strand 2	C	64	69	anti-parallel
Strand 3	C	252	256	anti-parallel
Strand 4	C	87	91	anti-parallel
Strand 5	C	181	190	anti-parallel
Strand 6	C	193	198	anti-parallel
Strand 7	C	215	222	anti-parallel
Strand 8	C	40	41	parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	35	first strand
Strand 2	C	64	69	anti-parallel
Strand 3	C	252	256	anti-parallel
Strand 4	C	87	91	anti-parallel
Strand 5	C	181	190	anti-parallel
Strand 6	C	201	202	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	54	first strand
Strand 2	C	263	265	anti-parallel
Strand 3	C	274	275	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	59	first strand
Strand 2	C	258	259	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	165	first strand
Strand 2	C	123	124	anti-parallel
Strand 3	C	114	118	anti-parallel
Strand 4	C	98	103	anti-parallel
Strand 5	C	235	236	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	306	first strand
Strand 2	C	578	585	anti-parallel
Strand 3	C	595	599	anti-parallel
Strand 4	C	634	637	anti-parallel
Strand 5	C	628	630	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	345	first strand
Strand 2	C	382	385	anti-parallel
Strand 3	C	494	500	anti-parallel
Strand 4	C	419	424	anti-parallel
Strand 5	C	365	366	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	345	first strand
Strand 2	C	382	385	anti-parallel
Strand 3	C	494	500	anti-parallel
Strand 4	C	388	389	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	349	first strand
Strand 2	C	510	511	parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	439	441	first strand
Strand 2	C	478	480	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	640	641	first strand
Strand 2	C	675	678	parallel
Strand 3	C	656	659	anti-parallel
Strand 4	C	650	653	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	693	710	first strand
Strand 2	C	1041	1060	anti-parallel
Strand 3	C	1029	1038	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	693	710	first strand
Strand 2	C	1041	1060	anti-parallel
Strand 3	C	1076	1078	anti-parallel
Strand 4	C	1085	1087	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	717	718	first strand
Strand 2	C	840	841	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	778	779	first strand
Strand 2	C	782	783	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1102	1104	first strand
Strand 2	C	1069	1072	anti-parallel
Strand 3	C	1062	1064	anti-parallel
Strand 4	C	1114	1116	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H13

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H13