Analysis of interatomic Contacts of Structural Units in PDB entry:
8H16

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H16 entry

There are 3 chains in PDB entry 8H16 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	THR 31	LEU 1123
A	THR 31	LEU 1123
C	THR 31	LEU 1123

There are 55 helices in PDB entry 8H16. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	281	291	Right-handed alpha
Helix 2	AA2	B	324	330	Right-handed alpha
Helix 3	AA3	B	336	340	Right-handed 310
Helix 4	AA4	B	352	357	Right-handed alpha
Helix 5	AA5	B	370	376	Right-handed 310
Helix 6	AA6	B	390	397	Right-handed 310
Helix 7	AA7	B	403	409	Right-handed alpha
Helix 8	AA8	B	602	612	Right-handed alpha
Helix 9	AA9	B	719	725	Right-handed alpha
Helix 10	AB1	B	728	736	Right-handed alpha
Helix 11	AB2	B	737	739	Right-handed 310
Helix 12	AB3	B	741	765	Right-handed alpha
Helix 13	AB4	B	798	808	Right-handed alpha
Helix 14	AB5	B	848	866	Right-handed alpha
Helix 15	AB6	B	868	873	Right-handed alpha
Helix 16	AB7	B	879	891	Right-handed alpha
Helix 17	AB8	B	894	901	Right-handed alpha
Helix 18	AB9	B	901	922	Right-handed alpha
Helix 19	AC1	B	927	947	Right-handed alpha
Helix 20	AC2	B	958	966	Right-handed alpha
Helix 21	AC3	B	967	1014	Right-handed alpha
Helix 22	AC4	A	281	291	Right-handed alpha
Helix 23	AC5	A	602	612	Right-handed alpha
Helix 24	AC6	A	719	725	Right-handed alpha
Helix 25	AC7	A	728	735	Right-handed alpha
Helix 26	AC8	A	740	765	Right-handed alpha
Helix 27	AC9	A	798	808	Right-handed alpha
Helix 28	AD1	A	848	867	Right-handed alpha
Helix 29	AD2	A	868	873	Right-handed alpha
Helix 30	AD3	A	879	892	Right-handed alpha
Helix 31	AD4	A	894	901	Right-handed alpha
Helix 32	AD5	A	901	923	Right-handed alpha
Helix 33	AD6	A	927	947	Right-handed alpha
Helix 34	AD7	A	958	966	Right-handed alpha
Helix 35	AD8	A	967	1015	Right-handed alpha
Helix 36	AD9	C	281	291	Right-handed alpha
Helix 37	AE1	C	324	330	Right-handed alpha
Helix 38	AE2	C	336	340	Right-handed 310
Helix 39	AE3	C	352	357	Right-handed alpha
Helix 40	AE4	C	370	374	Right-handed 310
Helix 41	AE5	C	403	409	Right-handed alpha
Helix 42	AE6	C	603	612	Right-handed alpha
Helix 43	AE7	C	719	725	Right-handed alpha
Helix 44	AE8	C	728	735	Right-handed alpha
Helix 45	AE9	C	736	739	Right-handed 310
Helix 46	AF1	C	741	765	Right-handed alpha
Helix 47	AF2	C	798	808	Right-handed alpha
Helix 48	AF3	C	848	866	Right-handed alpha
Helix 49	AF4	C	868	872	Right-handed 310
Helix 50	AF5	C	879	891	Right-handed alpha
Helix 51	AF6	C	894	901	Right-handed alpha
Helix 52	AF7	C	901	922	Right-handed alpha
Helix 53	AF8	C	927	947	Right-handed alpha
Helix 54	AF9	C	958	966	Right-handed alpha
Helix 55	AG1	C	967	1015	Right-handed alpha

There are 42 sheets in PDB entry 8H16. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	35	first strand
Strand 2	B	64	69	anti-parallel
Strand 3	B	251	256	anti-parallel
Strand 4	B	86	93	anti-parallel
Strand 5	B	181	190	anti-parallel
Strand 6	B	193	202	anti-parallel
Strand 7	B	214	223	anti-parallel
Strand 8	B	38	41	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	59	first strand
Strand 2	B	258	266	anti-parallel
Strand 3	B	272	277	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	B	230	235	anti-parallel
Strand 3	B	98	104	anti-parallel
Strand 4	B	113	117	anti-parallel
Strand 5	B	124	126	anti-parallel
Strand 6	B	164	165	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	306	first strand
Strand 2	B	578	585	anti-parallel
Strand 3	B	595	599	anti-parallel
Strand 4	B	634	637	anti-parallel
Strand 5	B	628	630	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	315	first strand
Strand 2	B	525	529	parallel
Strand 3	B	532	540	anti-parallel
Strand 4	B	570	574	anti-parallel
Strand 5	B	559	563	anti-parallel
Strand 6	B	551	553	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	345	first strand
Strand 2	B	382	389	anti-parallel
Strand 3	B	494	501	anti-parallel
Strand 4	B	418	424	anti-parallel
Strand 5	B	363	367	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	379	first strand
Strand 2	B	510	511	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	441	first strand
Strand 2	B	478	480	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	640	641	first strand
Strand 2	B	673	678	parallel
Strand 3	B	656	661	anti-parallel
Strand 4	B	650	653	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	683	685	first strand
Strand 2	C	769	771	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	693	710	first strand
Strand 2	B	1041	1060	anti-parallel
Strand 3	B	1029	1038	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	693	710	first strand
Strand 2	B	1041	1060	anti-parallel
Strand 3	B	1076	1079	anti-parallel
Strand 4	B	1084	1087	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	715	718	first strand
Strand 2	B	840	843	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	769	771	first strand
Strand 2	A	683	685	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	778	779	first strand
Strand 2	B	782	783	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1102	1104	first strand
Strand 2	B	1069	1072	anti-parallel
Strand 3	B	1063	1064	anti-parallel
Strand 4	B	1115	1116	parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	35	first strand
Strand 2	A	64	69	anti-parallel
Strand 3	A	251	256	anti-parallel
Strand 4	A	86	93	anti-parallel
Strand 5	A	181	190	anti-parallel
Strand 6	A	193	201	anti-parallel
Strand 7	A	215	222	anti-parallel
Strand 8	A	40	41	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	59	first strand
Strand 2	A	258	266	anti-parallel
Strand 3	A	272	277	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	230	235	anti-parallel
Strand 3	A	98	104	anti-parallel
Strand 4	A	113	118	anti-parallel
Strand 5	A	123	128	anti-parallel
Strand 6	A	161	165	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	306	first strand
Strand 2	A	578	585	anti-parallel
Strand 3	A	595	599	anti-parallel
Strand 4	A	634	637	anti-parallel
Strand 5	A	628	630	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	315	first strand
Strand 2	A	525	529	parallel
Strand 3	A	532	540	anti-parallel
Strand 4	A	570	574	anti-parallel
Strand 5	A	559	563	anti-parallel
Strand 6	A	551	553	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	640	641	first strand
Strand 2	A	673	678	parallel
Strand 3	A	656	661	anti-parallel
Strand 4	A	650	653	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	693	710	first strand
Strand 2	A	1041	1058	anti-parallel
Strand 3	A	1029	1038	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	716	718	first strand
Strand 2	A	840	842	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	769	771	first strand
Strand 2	C	683	685	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	778	779	first strand
Strand 2	A	782	783	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1102	1104	first strand
Strand 2	A	1069	1072	anti-parallel
Strand 3	A	1063	1064	anti-parallel
Strand 4	A	1115	1116	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1076	1080	first strand
Strand 2	A	1083	1087	anti-parallel

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There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	35	first strand
Strand 2	C	64	69	anti-parallel
Strand 3	C	251	256	anti-parallel
Strand 4	C	86	93	anti-parallel
Strand 5	C	181	190	anti-parallel
Strand 6	C	193	201	anti-parallel
Strand 7	C	215	222	anti-parallel
Strand 8	C	40	41	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	59	first strand
Strand 2	C	258	266	anti-parallel
Strand 3	C	272	277	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	82	first strand
Strand 2	C	230	235	anti-parallel
Strand 3	C	98	104	anti-parallel
Strand 4	C	113	118	anti-parallel
Strand 5	C	123	129	anti-parallel
Strand 6	C	157	165	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	305	first strand
Strand 2	C	579	585	anti-parallel
Strand 3	C	595	599	anti-parallel
Strand 4	C	634	637	anti-parallel
Strand 5	C	628	630	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	315	first strand
Strand 2	C	525	529	parallel
Strand 3	C	532	540	anti-parallel
Strand 4	C	570	574	anti-parallel
Strand 5	C	559	563	anti-parallel
Strand 6	C	551	553	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	345	first strand
Strand 2	C	382	389	anti-parallel
Strand 3	C	494	500	anti-parallel
Strand 4	C	418	424	anti-parallel
Strand 5	C	363	367	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	378	379	first strand
Strand 2	C	510	511	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	439	441	first strand
Strand 2	C	478	480	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	640	641	first strand
Strand 2	C	673	678	parallel
Strand 3	C	656	661	anti-parallel
Strand 4	C	650	653	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	693	710	first strand
Strand 2	C	1041	1060	anti-parallel
Strand 3	C	1029	1038	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	693	710	first strand
Strand 2	C	1041	1060	anti-parallel
Strand 3	C	1076	1079	anti-parallel
Strand 4	C	1084	1087	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	717	718	first strand
Strand 2	C	840	841	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	778	779	first strand
Strand 2	C	782	783	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1102	1104	first strand
Strand 2	C	1069	1072	anti-parallel
Strand 3	C	1063	1064	anti-parallel
Strand 4	C	1115	1116	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H16

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H16