Analysis of interatomic Contacts of Structural Units in PDB entry:
8H1K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H1K entry

There is 1 chain in PDB entry 8H1K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLY 422
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8H1K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 20Right-handed alpha
Helix 2
AA2
A
20 27Right-handed alpha
Helix 3
AA3
A
55 72Right-handed alpha
Helix 4
AA4
A
77 94Right-handed alpha
Helix 5
AA5
A
118 136Right-handed alpha
Helix 6
AA6
A
138 155Right-handed alpha
Helix 7
AA7
A
176 180Right-handed 310
Helix 8
AA8
A
186 204Right-handed alpha
Helix 9
AA9
A
205 223Right-handed alpha
Helix 10
AB1
A
270 289Right-handed alpha
Helix 11
AB2
A
291 294Right-handed 310
Helix 12
AB3
A
295 310Right-handed alpha
Helix 13
AB4
A
335 353Right-handed alpha
Helix 14
AB5
A
354 371Right-handed alpha
Helix 15
AB6
A
402 422Right-handed alpha
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There are 5 sheets in PDB entry 8H1K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
104 105anti-parallel
Strand 3
A
111 113anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
166 167anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
234 236anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 269first strand
Strand 2
A
321 323anti-parallel
Strand 3
A
328 330anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 334first strand
Strand 2
A
383 384anti-parallel
Strand 3
A
390 392anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il