Analysis of interatomic Contacts of Structural Units in PDB entry:
8H1W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H1W entry

There are 2 chains in PDB entry 8H1W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2SER 243
A
 SER 245VAL 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8H1W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 11Right-handed alpha
Helix 2
AA2
A
14 22Right-handed alpha
Helix 3
AA3
A
56 59Right-handed 310
Helix 4
AA4
A
60 75Right-handed alpha
Helix 5
AA5
A
88 103Right-handed alpha
Helix 6
AA6
A
112 124Right-handed alpha
Helix 7
AA7
A
138 148Right-handed alpha
Helix 8
AA8
A
159 169Right-handed alpha
Helix 9
AA9
A
192 204Right-handed alpha
Helix 10
AB1
A
219 223Right-handed 310
Helix 11
AB2
A
224 230Right-handed alpha
Helix 12
AB3
A
231 235Right-handed 310
Helix 13
AB4
A
256 267Right-handed alpha
Helix 14
AB5
A
267 272Right-handed alpha
Helix 15
AB6
A
277 294Right-handed alpha
Helix 16
AB7
A
295 315Right-handed alpha
Helix 17
AB8
A
333 347Right-handed alpha
Helix 18
AB9
A
360 363Right-handed 310
Helix 19
AC1
A
375 394Right-handed alpha
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There are 3 sheets in PDB entry 8H1W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
44 48anti-parallel
Strand 3
A
349 350parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 110first strand
Strand 2
A
251 255anti-parallel
Strand 3
A
237 241anti-parallel
Strand 4
A
206 210parallel
Strand 5
A
176 181parallel
Strand 6
A
130 134parallel
Strand 7
A
151 155parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 330first strand
Strand 2
A
365 369anti-parallel
Strand 3
A
352 354anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il