Analysis of interatomic Contacts of Structural Units in PDB entry:
8H25

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H25 entry

There are 4 chains in PDB entry 8H25 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	PRO 593
B	THR 2	PRO 593
C	THR 2	PRO 593
D	THR 2	PRO 593

There are 92 helices in PDB entry 8H25. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	29	Right-handed 310
Helix 2	AA2	A	30	32	Right-handed 310
Helix 3	AA3	A	33	45	Right-handed alpha
Helix 4	AA4	A	54	59	Right-handed alpha
Helix 5	AA5	A	68	71	Right-handed 310
Helix 6	AA6	A	72	83	Right-handed alpha
Helix 7	AA7	A	99	104	Right-handed 310
Helix 8	AA8	A	105	111	Right-handed 310
Helix 9	AA9	A	119	134	Right-handed alpha
Helix 10	AB1	A	135	145	Right-handed 310
Helix 11	AB2	A	156	160	Right-handed 310
Helix 12	AB3	A	163	177	Right-handed alpha
Helix 13	AB4	A	190	198	Right-handed alpha
Helix 14	AB5	A	199	203	Right-handed 310
Helix 15	AB6	A	213	228	Right-handed alpha
Helix 16	AB7	A	255	270	Right-handed alpha
Helix 17	AB8	A	316	330	Right-handed alpha
Helix 18	AB9	A	360	365	Right-handed alpha
Helix 19	AC1	A	375	380	Right-handed 310
Helix 20	AC2	A	429	431	Right-handed 310
Helix 21	AC3	A	459	468	Right-handed 310
Helix 22	AC4	A	491	498	Right-handed 310
Helix 23	AC5	A	558	562	Right-handed 310
Helix 24	AC6	B	26	29	Right-handed 310
Helix 25	AC7	B	30	32	Right-handed 310
Helix 26	AC8	B	33	45	Right-handed alpha
Helix 27	AC9	B	54	59	Right-handed alpha
Helix 28	AD1	B	68	71	Right-handed 310
Helix 29	AD2	B	72	83	Right-handed alpha
Helix 30	AD3	B	99	104	Right-handed 310
Helix 31	AD4	B	105	111	Right-handed 310
Helix 32	AD5	B	119	134	Right-handed alpha
Helix 33	AD6	B	135	145	Right-handed 310
Helix 34	AD7	B	156	160	Right-handed 310
Helix 35	AD8	B	163	177	Right-handed alpha
Helix 36	AD9	B	190	198	Right-handed alpha
Helix 37	AE1	B	199	203	Right-handed 310
Helix 38	AE2	B	213	228	Right-handed alpha
Helix 39	AE3	B	255	270	Right-handed alpha
Helix 40	AE4	B	316	330	Right-handed alpha
Helix 41	AE5	B	360	365	Right-handed alpha
Helix 42	AE6	B	375	380	Right-handed 310
Helix 43	AE7	B	429	431	Right-handed 310
Helix 44	AE8	B	459	468	Right-handed 310
Helix 45	AE9	B	491	498	Right-handed 310
Helix 46	AF1	B	558	562	Right-handed 310
Helix 47	AF2	C	26	29	Right-handed 310
Helix 48	AF3	C	30	32	Right-handed 310
Helix 49	AF4	C	33	45	Right-handed alpha
Helix 50	AF5	C	54	59	Right-handed alpha
Helix 51	AF6	C	68	71	Right-handed 310
Helix 52	AF7	C	72	83	Right-handed alpha
Helix 53	AF8	C	99	104	Right-handed 310
Helix 54	AF9	C	105	111	Right-handed 310
Helix 55	AG1	C	119	134	Right-handed alpha
Helix 56	AG2	C	135	145	Right-handed 310
Helix 57	AG3	C	156	160	Right-handed 310
Helix 58	AG4	C	163	177	Right-handed alpha
Helix 59	AG5	C	190	198	Right-handed alpha
Helix 60	AG6	C	199	203	Right-handed 310
Helix 61	AG7	C	213	228	Right-handed alpha
Helix 62	AG8	C	255	270	Right-handed alpha
Helix 63	AG9	C	316	330	Right-handed alpha
Helix 64	AH1	C	360	365	Right-handed alpha
Helix 65	AH2	C	375	380	Right-handed 310
Helix 66	AH3	C	429	431	Right-handed 310
Helix 67	AH4	C	459	468	Right-handed 310
Helix 68	AH5	C	491	498	Right-handed 310
Helix 69	AH6	C	558	562	Right-handed 310
Helix 70	AH7	D	26	29	Right-handed 310
Helix 71	AH8	D	30	32	Right-handed 310
Helix 72	AH9	D	33	45	Right-handed alpha
Helix 73	AI1	D	54	59	Right-handed alpha
Helix 74	AI2	D	68	71	Right-handed 310
Helix 75	AI3	D	72	83	Right-handed alpha
Helix 76	AI4	D	99	104	Right-handed 310
Helix 77	AI5	D	105	111	Right-handed 310
Helix 78	AI6	D	119	134	Right-handed alpha
Helix 79	AI7	D	135	145	Right-handed 310
Helix 80	AI8	D	156	160	Right-handed 310
Helix 81	AI9	D	163	177	Right-handed alpha
Helix 82	AJ1	D	190	198	Right-handed alpha
Helix 83	AJ2	D	199	203	Right-handed 310
Helix 84	AJ3	D	213	228	Right-handed alpha
Helix 85	AJ4	D	255	270	Right-handed alpha
Helix 86	AJ5	D	316	330	Right-handed alpha
Helix 87	AJ6	D	360	365	Right-handed alpha
Helix 88	AJ7	D	375	380	Right-handed 310
Helix 89	AJ8	D	429	431	Right-handed 310
Helix 90	AJ9	D	459	468	Right-handed 310
Helix 91	AK1	D	491	498	Right-handed 310
Helix 92	AK2	D	558	562	Right-handed 310

There are 32 sheets in PDB entry 8H25. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	6	first strand
Strand 2	A	10	12	anti-parallel
Strand 3	A	15	17	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	24	first strand
Strand 2	A	48	52	parallel
Strand 3	A	86	90	parallel
Strand 4	A	148	152	parallel
Strand 5	A	183	187	parallel
Strand 6	A	205	210	parallel
Strand 7	A	235	240	parallel
Strand 8	A	271	278	parallel
Strand 9	A	20	24	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	292	first strand
Strand 2	A	295	298	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	350	first strand
Strand 2	A	581	585	anti-parallel
Strand 3	A	524	527	anti-parallel
Strand 4	A	554	557	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	356	first strand
Strand 2	A	510	518	anti-parallel
Strand 3	A	565	573	anti-parallel
Strand 4	A	533	538	anti-parallel
Strand 5	A	541	547	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	370	first strand
Strand 2	A	485	489	anti-parallel
Strand 3	A	385	390	anti-parallel
Strand 4	A	446	451	anti-parallel
Strand 5	A	413	418	anti-parallel
Strand 6	A	421	427	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	394	first strand
Strand 2	A	442	443	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	436	first strand
Strand 2	A	404	411	anti-parallel
Strand 3	A	470	477	anti-parallel
Strand 4	A	480	481	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	10	12	anti-parallel
Strand 3	B	15	17	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	24	first strand
Strand 2	B	48	52	parallel
Strand 3	B	86	90	parallel
Strand 4	B	148	152	parallel
Strand 5	B	183	187	parallel
Strand 6	B	205	210	parallel
Strand 7	B	235	240	parallel
Strand 8	B	271	278	parallel
Strand 9	B	20	24	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	292	first strand
Strand 2	B	295	298	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	350	first strand
Strand 2	B	581	585	anti-parallel
Strand 3	B	524	527	anti-parallel
Strand 4	B	554	557	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	356	first strand
Strand 2	B	510	518	anti-parallel
Strand 3	B	565	573	anti-parallel
Strand 4	B	533	538	anti-parallel
Strand 5	B	541	547	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	370	first strand
Strand 2	B	485	489	anti-parallel
Strand 3	B	385	390	anti-parallel
Strand 4	B	446	451	anti-parallel
Strand 5	B	413	418	anti-parallel
Strand 6	B	421	427	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	394	first strand
Strand 2	B	442	443	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	436	first strand
Strand 2	B	404	411	anti-parallel
Strand 3	B	470	477	anti-parallel
Strand 4	B	480	481	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	6	first strand
Strand 2	C	10	12	anti-parallel
Strand 3	C	15	17	anti-parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	24	first strand
Strand 2	C	48	52	parallel
Strand 3	C	86	90	parallel
Strand 4	C	148	152	parallel
Strand 5	C	183	187	parallel
Strand 6	C	205	210	parallel
Strand 7	C	235	240	parallel
Strand 8	C	271	278	parallel
Strand 9	C	20	24	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	289	292	first strand
Strand 2	C	295	298	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	350	first strand
Strand 2	C	581	585	anti-parallel
Strand 3	C	524	527	anti-parallel
Strand 4	C	554	557	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	356	first strand
Strand 2	C	510	518	anti-parallel
Strand 3	C	565	573	anti-parallel
Strand 4	C	533	538	anti-parallel
Strand 5	C	541	547	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	368	370	first strand
Strand 2	C	485	489	anti-parallel
Strand 3	C	385	390	anti-parallel
Strand 4	C	446	451	anti-parallel
Strand 5	C	413	418	anti-parallel
Strand 6	C	421	427	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	393	394	first strand
Strand 2	C	442	443	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	435	436	first strand
Strand 2	C	404	411	anti-parallel
Strand 3	C	470	477	anti-parallel
Strand 4	C	480	481	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	10	12	anti-parallel
Strand 3	D	15	17	anti-parallel

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There are 9 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	24	first strand
Strand 2	D	48	52	parallel
Strand 3	D	86	90	parallel
Strand 4	D	148	152	parallel
Strand 5	D	183	187	parallel
Strand 6	D	205	210	parallel
Strand 7	D	235	240	parallel
Strand 8	D	271	278	parallel
Strand 9	D	20	24	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	289	292	first strand
Strand 2	D	295	298	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	350	first strand
Strand 2	D	581	585	anti-parallel
Strand 3	D	524	527	anti-parallel
Strand 4	D	554	557	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	356	first strand
Strand 2	D	510	518	anti-parallel
Strand 3	D	565	573	anti-parallel
Strand 4	D	533	538	anti-parallel
Strand 5	D	541	547	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	368	370	first strand
Strand 2	D	485	489	anti-parallel
Strand 3	D	385	390	anti-parallel
Strand 4	D	446	451	anti-parallel
Strand 5	D	413	418	anti-parallel
Strand 6	D	421	427	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	393	394	first strand
Strand 2	D	442	443	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	435	436	first strand
Strand 2	D	404	411	anti-parallel
Strand 3	D	470	477	anti-parallel
Strand 4	D	480	481	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H25

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H25