Analysis of interatomic Contacts of Structural Units in PDB entry:
8H2H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H2H entry

There are 3 chains in PDB entry 8H2H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	G 1	C 2492
B	C 1	C 12
D	MET 1	LYS 599

There are 24 helices in PDB entry 8H2H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	3	5	Right-handed 310
Helix 2	AA2	D	6	18	Right-handed alpha
Helix 3	AA3	D	26	30	Right-handed 310
Helix 4	AA4	D	63	72	Right-handed alpha
Helix 5	AA5	D	106	123	Right-handed alpha
Helix 6	AA6	D	138	150	Right-handed alpha
Helix 7	AA7	D	171	181	Right-handed alpha
Helix 8	AA8	D	183	196	Right-handed alpha
Helix 9	AA9	D	220	231	Right-handed alpha
Helix 10	AB1	D	232	241	Right-handed alpha
Helix 11	AB2	D	249	267	Right-handed alpha
Helix 12	AB3	D	271	283	Right-handed alpha
Helix 13	AB4	D	284	288	Right-handed 310
Helix 14	AB5	D	325	333	Right-handed alpha
Helix 15	AB6	D	392	401	Right-handed alpha
Helix 16	AB7	D	417	421	Right-handed 310
Helix 17	AB8	D	424	443	Right-handed alpha
Helix 18	AB9	D	444	446	Right-handed 310
Helix 19	AC1	D	448	451	Right-handed 310
Helix 20	AC2	D	452	472	Right-handed alpha
Helix 21	AC3	D	474	482	Right-handed alpha
Helix 22	AC4	D	507	512	Right-handed alpha
Helix 23	AC5	D	575	580	Right-handed alpha
Helix 24	AC6	D	590	595	Right-handed alpha

There are 4 sheets in PDB entry 8H2H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	300	301	first strand
Strand 2	D	314	315	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	305	first strand
Strand 2	D	310	311	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	492	493	first strand
Strand 2	D	500	501	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	558	559	first strand
Strand 2	D	583	584	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H2H

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H2H