Analysis of interatomic Contacts of Structural Units in PDB entry:
8H2M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H2M entry

There is 1 chain in PDB entry 8H2M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 327VAL 1162
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8H2M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
330 335Right-handed alpha
Helix 2
AA2
A
349 361Right-handed alpha
Helix 3
AA3
A
366 390Right-handed alpha
Helix 4
AA4
A
393 402Right-handed alpha
Helix 5
AA5
A
418 432Right-handed alpha
Helix 6
AA6
A
433 440Right-handed alpha
Helix 7
AA7
A
470 479Right-handed alpha
Helix 8
AA8
A
565 567Right-handed 310
Helix 9
AA9
A
580 594Right-handed alpha
Helix 10
AB1
A
690 693Right-handed 310
Helix 11
AB2
A
696 705Right-handed alpha
Helix 12
AB3
A
722 729Right-handed alpha
Helix 13
AB4
A
773 777Right-handed 310
Helix 14
AB5
A
798 809Right-handed alpha
Helix 15
AB6
A
830 847Right-handed alpha
Helix 16
AB7
A
847 856Right-handed alpha
Helix 17
AB8
A
863 874Right-handed alpha
Helix 18
AB9
A
876 895Right-handed alpha
Helix 19
AC1
A
901 912Right-handed alpha
Helix 20
AC2
A
916 922Right-handed 310
Helix 21
AC3
A
925 927Right-handed 310
Helix 22
AC4
A
936 946Right-handed alpha
Helix 23
AC5
A
960 969Right-handed alpha
Helix 24
AC6
A
972 985Right-handed alpha
Helix 25
AC7
A
988 1006Right-handed alpha
Helix 26
AC8
A
1007 1023Right-handed alpha
Helix 27
AC9
A
1024 1043Right-handed alpha
Helix 28
AD1
A
1064 1074Right-handed alpha
Helix 29
AD2
A
1078 1082Right-handed 310
Helix 30
AD3
A
1096 1116Right-handed alpha
Helix 31
AD4
A
1130 1133Right-handed 310
Helix 32
AD5
A
1134 1142Right-handed alpha
Helix 33
AD6
A
1143 1148Right-handed 310
Helix 34
AD7
A
1153 1155Right-handed 310
Helix 35
AD8
A
1156 1161Right-handed alpha
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There are 10 sheets in PDB entry 8H2M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 329first strand
Strand 2
A
481 482anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 341first strand
Strand 2
A
456 460anti-parallel
Strand 3
A
451 452anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 415first strand
Strand 2
A
404 409anti-parallel
Strand 3
A
441 446anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 489first strand
Strand 2
A
598 601anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
497 500first strand
Strand 2
A
560 563parallel
Strand 3
A
511 515anti-parallel
Strand 4
A
549 553parallel
Strand 5
A
528 532anti-parallel
Strand 6
A
603 606anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
535 537first strand
Strand 2
A
543 546anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 574first strand
Strand 2
A
577 579anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
610 611first strand
Strand 2
A
682 688anti-parallel
Strand 3
A
766 768parallel
Strand 4
A
715 721anti-parallel
Strand 5
A
707 709anti-parallel
Strand 6
A
929 932anti-parallel
Strand 7
A
827 828anti-parallel
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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
610 611first strand
Strand 2
A
682 688anti-parallel
Strand 3
A
784 788anti-parallel
Strand 4
A
736 741anti-parallel
Strand 5
A
752 759anti-parallel
Strand 6
A
715 721parallel
Strand 7
A
707 709anti-parallel
Strand 8
A
929 932anti-parallel
Strand 9
A
827 828anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
947 951first strand
Strand 2
A
1049 1053anti-parallel
Strand 3
A
1059 1062anti-parallel
Strand 4
A
1084 1087anti-parallel
Strand 5
A
1090 1095anti-parallel
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