Analysis of interatomic Contacts of Structural Units in PDB entry:
8H2T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H2T entry

There are 6 chains in PDB entry 8H2T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 3	MET 437
A	VAL 6	ILE 162
D	SER 3	MET 437
E	VAL 6	ILE 162
G	SER 3	MET 437
H	VAL 6	ILE 162

There are 70 helices in PDB entry 8H2T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	7	13	Right-handed alpha
Helix 2	AA2	B	22	27	Right-handed alpha
Helix 3	AA3	B	27	37	Right-handed alpha
Helix 4	AA4	B	50	52	Right-handed 310
Helix 5	AA5	B	124	128	Right-handed 310
Helix 6	AA6	B	165	171	Right-handed alpha
Helix 7	AA7	B	174	183	Right-handed alpha
Helix 8	AA8	B	203	210	Right-handed alpha
Helix 9	AA9	B	211	213	Right-handed 310
Helix 10	AB1	B	216	221	Right-handed alpha
Helix 11	AB2	B	221	233	Right-handed alpha
Helix 12	AB3	B	242	249	Right-handed alpha
Helix 13	AB4	B	250	253	Right-handed 310
Helix 14	AB5	B	254	262	Right-handed alpha
Helix 15	AB6	B	286	297	Right-handed alpha
Helix 16	AB7	B	298	307	Right-handed alpha
Helix 17	AB8	B	352	368	Right-handed alpha
Helix 18	AB9	B	371	388	Right-handed alpha
Helix 19	AC1	B	403	409	Right-handed 310
Helix 20	AC2	B	419	435	Right-handed alpha
Helix 21	AC3	A	7	24	Right-handed alpha
Helix 22	AC4	A	26	32	Right-handed alpha
Helix 23	AC5	A	61	73	Right-handed alpha
Helix 24	AC6	A	77	81	Right-handed 310
Helix 25	AC7	D	7	13	Right-handed alpha
Helix 26	AC8	D	22	27	Right-handed alpha
Helix 27	AC9	D	27	37	Right-handed alpha
Helix 28	AD1	D	50	52	Right-handed 310
Helix 29	AD2	D	124	129	Right-handed 310
Helix 30	AD3	D	165	171	Right-handed alpha
Helix 31	AD4	D	174	183	Right-handed alpha
Helix 32	AD5	D	203	211	Right-handed alpha
Helix 33	AD6	D	216	221	Right-handed alpha
Helix 34	AD7	D	221	233	Right-handed alpha
Helix 35	AD8	D	242	249	Right-handed alpha
Helix 36	AD9	D	250	253	Right-handed 310
Helix 37	AE1	D	254	262	Right-handed alpha
Helix 38	AE2	D	286	297	Right-handed alpha
Helix 39	AE3	D	298	307	Right-handed alpha
Helix 40	AE4	D	352	368	Right-handed alpha
Helix 41	AE5	D	371	388	Right-handed alpha
Helix 42	AE6	D	403	409	Right-handed 310
Helix 43	AE7	D	419	436	Right-handed alpha
Helix 44	AE8	E	7	24	Right-handed alpha
Helix 45	AE9	E	26	32	Right-handed alpha
Helix 46	AF1	E	61	73	Right-handed alpha
Helix 47	AF2	E	77	81	Right-handed 310
Helix 48	AF3	G	7	13	Right-handed alpha
Helix 49	AF4	G	22	27	Right-handed alpha
Helix 50	AF5	G	27	37	Right-handed alpha
Helix 51	AF6	G	50	52	Right-handed 310
Helix 52	AF7	G	124	129	Right-handed 310
Helix 53	AF8	G	165	171	Right-handed alpha
Helix 54	AF9	G	174	183	Right-handed alpha
Helix 55	AG1	G	203	211	Right-handed alpha
Helix 56	AG2	G	216	221	Right-handed alpha
Helix 57	AG3	G	221	233	Right-handed alpha
Helix 58	AG4	G	242	249	Right-handed alpha
Helix 59	AG5	G	250	253	Right-handed 310
Helix 60	AG6	G	254	262	Right-handed alpha
Helix 61	AG7	G	286	297	Right-handed alpha
Helix 62	AG8	G	299	307	Right-handed alpha
Helix 63	AG9	G	352	368	Right-handed alpha
Helix 64	AH1	G	371	388	Right-handed alpha
Helix 65	AH2	G	403	409	Right-handed 310
Helix 66	AH3	G	419	436	Right-handed alpha
Helix 67	AH4	H	7	24	Right-handed alpha
Helix 68	AH5	H	26	32	Right-handed alpha
Helix 69	AH6	H	61	73	Right-handed alpha
Helix 70	AH7	H	77	81	Right-handed 310

There are 24 sheets in PDB entry 8H2T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	21	first strand
Strand 2	B	395	397	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	48	first strand
Strand 2	B	154	157	anti-parallel
Strand 3	B	148	151	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	99	first strand
Strand 2	B	57	63	anti-parallel
Strand 3	B	66	72	anti-parallel
Strand 4	B	78	82	anti-parallel
Strand 5	B	144	145	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	112	114	anti-parallel
Strand 3	B	119	121	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	191	first strand
Strand 2	B	338	348	anti-parallel
Strand 3	B	196	200	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	191	first strand
Strand 2	B	338	348	anti-parallel
Strand 3	B	327	335	anti-parallel
Strand 4	B	319	322	anti-parallel
Strand 5	B	312	315	anti-parallel
Strand 6	B	271	273	anti-parallel
Strand 7	B	263	265	anti-parallel
Strand 8	B	412	414	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	60	first strand
Strand 2	A	34	43	anti-parallel
Strand 3	A	138	148	parallel
Strand 4	A	120	135	anti-parallel
Strand 5	A	104	117	anti-parallel
Strand 6	A	85	90	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	60	first strand
Strand 2	A	34	43	anti-parallel
Strand 3	A	138	148	parallel
Strand 4	A	120	135	anti-parallel
Strand 5	A	104	117	anti-parallel
Strand 6	A	94	99	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	21	first strand
Strand 2	D	395	397	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	48	first strand
Strand 2	D	154	157	anti-parallel
Strand 3	D	148	151	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	99	first strand
Strand 2	D	57	63	anti-parallel
Strand 3	D	66	72	anti-parallel
Strand 4	D	78	82	anti-parallel
Strand 5	D	144	145	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	105	first strand
Strand 2	D	112	114	anti-parallel
Strand 3	D	119	121	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	191	first strand
Strand 2	D	338	348	anti-parallel
Strand 3	D	196	200	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	191	first strand
Strand 2	D	338	348	anti-parallel
Strand 3	D	327	335	anti-parallel
Strand 4	D	319	322	anti-parallel
Strand 5	D	312	315	anti-parallel
Strand 6	D	271	273	anti-parallel
Strand 7	D	263	265	anti-parallel
Strand 8	D	412	414	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	60	first strand
Strand 2	E	34	43	anti-parallel
Strand 3	E	138	148	parallel
Strand 4	E	120	135	anti-parallel
Strand 5	E	104	117	anti-parallel
Strand 6	E	85	90	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	60	first strand
Strand 2	E	34	43	anti-parallel
Strand 3	E	138	148	parallel
Strand 4	E	120	135	anti-parallel
Strand 5	E	104	117	anti-parallel
Strand 6	E	94	99	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	21	first strand
Strand 2	G	395	397	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	48	first strand
Strand 2	G	154	157	anti-parallel
Strand 3	G	148	151	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	99	first strand
Strand 2	G	57	63	anti-parallel
Strand 3	G	66	72	anti-parallel
Strand 4	G	78	82	anti-parallel
Strand 5	G	144	145	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	103	105	first strand
Strand 2	G	112	114	anti-parallel
Strand 3	G	119	121	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	189	191	first strand
Strand 2	G	338	348	anti-parallel
Strand 3	G	196	200	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	189	191	first strand
Strand 2	G	338	348	anti-parallel
Strand 3	G	327	335	anti-parallel
Strand 4	G	319	322	anti-parallel
Strand 5	G	312	315	anti-parallel
Strand 6	G	271	273	anti-parallel
Strand 7	G	263	265	anti-parallel
Strand 8	G	412	414	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	60	first strand
Strand 2	H	34	43	anti-parallel
Strand 3	H	138	148	parallel
Strand 4	H	120	135	anti-parallel
Strand 5	H	104	117	anti-parallel
Strand 6	H	85	90	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	60	first strand
Strand 2	H	34	43	anti-parallel
Strand 3	H	138	148	parallel
Strand 4	H	120	135	anti-parallel
Strand 5	H	104	117	anti-parallel
Strand 6	H	94	99	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H2T

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H2T