Analysis of interatomic Contacts of Structural Units in PDB entry:
8H2U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H2U entry

There are 20 chains in PDB entry 8H2U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 12	SER 749
B	LYS 4	SER 731
C	ALA 2	TYR 81
D	THR 54	ALA 194
E	GLY 36	ALA 96
F	ASP 63	GLU 217
G	ALA 31	ASN 124
H	SER 36	VAL 126
I	SER 73	LYS 101
J	MET 1	PHE 39
K	PHE 29	LEU 107
L	ALA 40	ILE 191
0	GLY 37	VAL 225
8	GLN 28	LEU 240
7	ARG 30	ASN 238
3	SER 60	THR 260
1	GLY 37	SER 224
4	LYS 53	ASP 260
6	PRO 30	SER 219
5	LYS 33	CYS 234

There are163 helices in PDB entry 8H2U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	42	Right-handed 310
Helix 2	AA2	A	46	55	Right-handed alpha
Helix 3	AA3	A	58	63	Right-handed alpha
Helix 4	AA4	A	65	98	Right-handed alpha
Helix 5	AA5	A	100	105	Right-handed alpha
Helix 6	AA6	A	106	111	Right-handed 310
Helix 7	AA7	A	123	128	Right-handed 310
Helix 8	AA8	A	143	152	Right-handed alpha
Helix 9	AA9	A	155	183	Right-handed alpha
Helix 10	AB1	A	187	192	Right-handed alpha
Helix 11	AB2	A	193	204	Right-handed alpha
Helix 12	AB3	A	205	220	Right-handed alpha
Helix 13	AB4	A	220	231	Right-handed alpha
Helix 14	AB5	A	233	237	Right-handed 310
Helix 15	AB6	A	241	246	Right-handed alpha
Helix 16	AB7	A	247	254	Right-handed alpha
Helix 17	AB8	A	255	260	Right-handed 310
Helix 18	AB9	A	261	266	Right-handed alpha
Helix 19	AC1	A	268	275	Right-handed 310
Helix 20	AC2	A	290	309	Right-handed alpha
Helix 21	AC3	A	321	329	Right-handed alpha
Helix 22	AC4	A	340	346	Right-handed alpha
Helix 23	AC5	A	348	374	Right-handed alpha
Helix 24	AC6	A	383	416	Right-handed alpha
Helix 25	AC7	A	424	433	Right-handed alpha
Helix 26	AC8	A	433	465	Right-handed alpha
Helix 27	AC9	A	467	471	Right-handed 310
Helix 28	AD1	A	481	494	Right-handed alpha
Helix 29	AD2	A	529	556	Right-handed alpha
Helix 30	AD3	A	565	570	Right-handed alpha
Helix 31	AD4	A	587	618	Right-handed alpha
Helix 32	AD5	A	634	639	Right-handed alpha
Helix 33	AD6	A	641	649	Right-handed alpha
Helix 34	AD7	A	649	654	Right-handed alpha
Helix 35	AD8	A	654	659	Right-handed alpha
Helix 36	AD9	A	665	688	Right-handed alpha
Helix 37	AE1	A	689	707	Right-handed alpha
Helix 38	AE2	A	719	749	Right-handed alpha
Helix 39	AE3	B	10	15	Right-handed alpha
Helix 40	AE4	B	19	29	Right-handed alpha
Helix 41	AE5	B	39	73	Right-handed alpha
Helix 42	AE6	B	74	81	Right-handed alpha
Helix 43	AE7	B	98	105	Right-handed alpha
Helix 44	AE8	B	120	129	Right-handed alpha
Helix 45	AE9	B	132	157	Right-handed alpha
Helix 46	AF1	B	165	170	Right-handed alpha
Helix 47	AF2	B	171	182	Right-handed alpha
Helix 48	AF3	B	184	198	Right-handed alpha
Helix 49	AF4	B	198	204	Right-handed alpha
Helix 50	AF5	B	212	216	Right-handed 310
Helix 51	AF6	B	224	229	Right-handed alpha
Helix 52	AF7	B	230	236	Right-handed 310
Helix 53	AF8	B	270	289	Right-handed alpha
Helix 54	AF9	B	301	309	Right-handed alpha
Helix 55	AG1	B	311	315	Right-handed 310
Helix 56	AG2	B	322	330	Right-handed alpha
Helix 57	AG3	B	330	356	Right-handed alpha
Helix 58	AG4	B	365	398	Right-handed alpha
Helix 59	AG5	B	407	415	Right-handed alpha
Helix 60	AG6	B	415	447	Right-handed alpha
Helix 61	AG7	B	449	453	Right-handed 310
Helix 62	AG8	B	458	468	Right-handed alpha
Helix 63	AG9	B	484	491	Right-handed alpha
Helix 64	AH1	B	494	503	Right-handed alpha
Helix 65	AH2	B	514	541	Right-handed alpha
Helix 66	AH3	B	550	554	Right-handed 310
Helix 67	AH4	B	572	605	Right-handed alpha
Helix 68	AH5	B	606	614	Right-handed alpha
Helix 69	AH6	B	616	624	Right-handed alpha
Helix 70	AH7	B	624	629	Right-handed alpha
Helix 71	AH8	B	629	634	Right-handed alpha
Helix 72	AH9	B	644	667	Right-handed alpha
Helix 73	AI1	B	668	685	Right-handed alpha
Helix 74	AI2	B	688	692	Right-handed 310
Helix 75	AI3	B	702	731	Right-handed alpha
Helix 76	AI4	C	15	21	Right-handed alpha
Helix 77	AI5	C	44	48	Right-handed 310
Helix 78	AI6	C	52	58	Right-handed alpha
Helix 79	AI7	D	75	81	Right-handed alpha
Helix 80	AI8	D	118	131	Right-handed alpha
Helix 81	AI9	D	174	178	Right-handed 310
Helix 82	AJ1	F	63	67	Right-handed 310
Helix 83	AJ2	F	73	92	Right-handed alpha
Helix 84	AJ3	F	98	120	Right-handed alpha
Helix 85	AJ4	F	149	176	Right-handed alpha
Helix 86	AJ5	F	180	185	Right-handed 310
Helix 87	AJ6	F	188	199	Right-handed alpha
Helix 88	AJ7	F	201	213	Right-handed alpha
Helix 89	AJ8	G	33	50	Right-handed alpha
Helix 90	AJ9	G	53	59	Right-handed alpha
Helix 91	AK1	G	64	65	Right-handed alpha
Helix 92	AK2	G	83	88	Right-handed alpha
Helix 93	AK3	G	96	120	Right-handed alpha
Helix 94	AK4	H	63	73	Right-handed alpha
Helix 95	AK5	H	82	101	Right-handed alpha
Helix 96	AK6	I	75	85	Right-handed alpha
Helix 97	AK7	I	85	101	Right-handed alpha
Helix 98	AK8	J	2	9	Right-handed alpha
Helix 99	AK9	J	10	33	Right-handed alpha
Helix 100	AL1	K	32	48	Right-handed alpha
Helix 101	AL2	K	86	107	Right-handed alpha
Helix 102	AL3	L	45	49	Right-handed 310
Helix 103	AL4	L	67	72	Right-handed alpha
Helix 104	AL5	L	82	96	Right-handed alpha
Helix 105	AL6	L	98	103	Right-handed alpha
Helix 106	AL7	L	104	108	Right-handed 310
Helix 107	AL8	L	113	140	Right-handed alpha
Helix 108	AL9	L	165	184	Right-handed alpha
Helix 109	AM1	0	67	99	Right-handed alpha
Helix 110	AM2	0	106	110	Right-handed 310
Helix 111	AM3	0	127	144	Right-handed alpha
Helix 112	AM4	0	166	198	Right-handed alpha
Helix 113	AM5	0	201	212	Right-handed alpha
Helix 114	AM6	8	62	97	Right-handed alpha
Helix 115	AM7	8	103	107	Right-handed 310
Helix 116	AM8	8	118	143	Right-handed alpha
Helix 117	AM9	8	144	147	Right-handed 310
Helix 118	AN1	8	170	174	Right-handed 310
Helix 119	AN2	8	187	214	Right-handed alpha
Helix 120	AN3	8	216	227	Right-handed alpha
Helix 121	AN4	7	61	96	Right-handed alpha
Helix 122	AN5	7	102	105	Right-handed 310
Helix 123	AN6	7	106	113	Right-handed alpha
Helix 124	AN7	7	116	140	Right-handed alpha
Helix 125	AN8	7	143	148	Right-handed 310
Helix 126	AN9	7	166	171	Right-handed alpha
Helix 127	AO1	7	179	212	Right-handed alpha
Helix 128	AO2	7	219	225	Right-handed alpha
Helix 129	AO3	3	83	114	Right-handed alpha
Helix 130	AO4	3	131	135	Right-handed 310
Helix 131	AO5	3	143	168	Right-handed alpha
Helix 132	AO6	3	179	183	Right-handed 310
Helix 133	AO7	3	194	199	Right-handed alpha
Helix 134	AO8	3	206	239	Right-handed alpha
Helix 135	AO9	3	241	252	Right-handed alpha
Helix 136	AP1	1	67	98	Right-handed alpha
Helix 137	AP2	1	105	110	Right-handed 310
Helix 138	AP3	1	127	147	Right-handed alpha
Helix 139	AP4	1	155	159	Right-handed 310
Helix 140	AP5	1	167	197	Right-handed alpha
Helix 141	AP6	1	201	212	Right-handed alpha
Helix 142	AP7	4	89	124	Right-handed alpha
Helix 143	AP8	4	135	139	Right-handed 310
Helix 144	AP9	4	145	170	Right-handed alpha
Helix 145	AQ1	4	195	199	Right-handed 310
Helix 146	AQ2	4	209	237	Right-handed alpha
Helix 147	AQ3	4	239	250	Right-handed alpha
Helix 148	AQ4	4	255	260	Right-handed alpha
Helix 149	AQ5	6	56	59	Right-handed 310
Helix 150	AQ6	6	60	89	Right-handed alpha
Helix 151	AQ7	6	96	102	Right-handed 310
Helix 152	AQ8	6	109	134	Right-handed alpha
Helix 153	AQ9	6	158	162	Right-handed 310
Helix 154	AR1	6	170	198	Right-handed alpha
Helix 155	AR2	6	201	211	Right-handed alpha
Helix 156	AR3	5	59	62	Right-handed 310
Helix 157	AR4	5	63	93	Right-handed alpha
Helix 158	AR5	5	122	142	Right-handed alpha
Helix 159	AR6	5	166	170	Right-handed 310
Helix 160	AR7	5	178	207	Right-handed alpha
Helix 161	AR8	5	214	218	Right-handed 310
Helix 162	AR9	5	221	225	Right-handed 310
Helix 163	AS1	5	226	231	Right-handed alpha

There are 11 sheets in PDB entry 8H2U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	184	186	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	135	139	anti-parallel
Strand 3	A	129	132	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	517	first strand
Strand 2	A	520	523	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	620	622	first strand
Strand 2	A	627	629	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	91	first strand
Strand 2	B	114	116	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	456	first strand
Strand 2	F	131	133	parallel
Strand 3	F	124	125	anti-parallel
Strand 4	F	68	69	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	65	68	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	115	first strand
Strand 2	D	84	90	anti-parallel
Strand 3	D	137	140	anti-parallel
Strand 4	D	149	151	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	97	first strand
Strand 2	D	103	105	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	88	first strand
Strand 2	E	71	74	anti-parallel
Strand 3	E	56	62	anti-parallel
Strand 4	E	42	45	anti-parallel
Strand 5	E	93	95	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H2U

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H2U