Analysis of interatomic Contacts of Structural Units in PDB entry:
8H38

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H38 entry

There are 13 chains in PDB entry 8H38 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 74	LYS 503
B	SER 24	ALA 443
C	ALA 2	MET 408
D	MET 1	GLN 406
E	SER 24	ASN 332
F	SER 29	GLN 316
G	PRO 7	LEU 220
H	ALA 10	ASN 209
I	GLU 6	PRO 598
L	MET 25	ALA 768
M	ARG 7	PRO 598
R	LYS 20	HIS 108
N	MET 1	GLY 76

There are193 helices in PDB entry 8H38. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	83	91	Right-handed alpha
Helix 2	AA2	A	93	107	Right-handed alpha
Helix 3	AA3	A	110	123	Right-handed alpha
Helix 4	AA4	A	128	146	Right-handed alpha
Helix 5	AA5	A	164	192	Right-handed alpha
Helix 6	AA6	A	193	212	Right-handed alpha
Helix 7	AA7	A	213	225	Right-handed alpha
Helix 8	AA8	A	230	248	Right-handed alpha
Helix 9	AA9	A	250	264	Right-handed alpha
Helix 10	AB1	A	280	296	Right-handed alpha
Helix 11	AB2	A	299	308	Right-handed alpha
Helix 12	AB3	A	310	314	Right-handed 310
Helix 13	AB4	A	321	337	Right-handed alpha
Helix 14	AB5	A	338	350	Right-handed alpha
Helix 15	AB6	A	351	359	Right-handed alpha
Helix 16	AB7	A	359	371	Right-handed alpha
Helix 17	AB8	A	373	389	Right-handed alpha
Helix 18	AB9	A	394	415	Right-handed alpha
Helix 19	AC1	A	422	428	Right-handed alpha
Helix 20	AC2	A	432	447	Right-handed alpha
Helix 21	AC3	A	466	498	Right-handed alpha
Helix 22	AC4	B	30	42	Right-handed alpha
Helix 23	AC5	B	46	62	Right-handed alpha
Helix 24	AC6	B	65	82	Right-handed alpha
Helix 25	AC7	B	85	100	Right-handed alpha
Helix 26	AC8	B	104	120	Right-handed alpha
Helix 27	AC9	B	124	142	Right-handed alpha
Helix 28	AD1	B	144	162	Right-handed alpha
Helix 29	AD2	B	165	178	Right-handed alpha
Helix 30	AD3	B	190	209	Right-handed alpha
Helix 31	AD4	B	210	225	Right-handed alpha
Helix 32	AD5	B	230	249	Right-handed alpha
Helix 33	AD6	B	250	269	Right-handed alpha
Helix 34	AD7	B	272	287	Right-handed alpha
Helix 35	AD8	B	300	304	Right-handed 310
Helix 36	AD9	B	305	321	Right-handed alpha
Helix 37	AE1	B	322	333	Right-handed alpha
Helix 38	AE2	B	333	338	Right-handed alpha
Helix 39	AE3	B	340	367	Right-handed alpha
Helix 40	AE4	B	371	379	Right-handed alpha
Helix 41	AE5	B	381	395	Right-handed alpha
Helix 42	AE6	B	420	443	Right-handed alpha
Helix 43	AE7	C	3	18	Right-handed alpha
Helix 44	AE8	C	20	29	Right-handed alpha
Helix 45	AE9	C	32	38	Right-handed alpha
Helix 46	AF1	C	41	49	Right-handed alpha
Helix 47	AF2	C	52	68	Right-handed alpha
Helix 48	AF3	C	73	87	Right-handed alpha
Helix 49	AF4	C	96	115	Right-handed alpha
Helix 50	AF5	C	119	132	Right-handed alpha
Helix 51	AF6	C	140	153	Right-handed alpha
Helix 52	AF7	C	157	163	Right-handed alpha
Helix 53	AF8	C	177	195	Right-handed alpha
Helix 54	AF9	C	197	210	Right-handed alpha
Helix 55	AG1	C	217	235	Right-handed alpha
Helix 56	AG2	C	248	257	Right-handed alpha
Helix 57	AG3	C	257	270	Right-handed alpha
Helix 58	AG4	C	271	282	Right-handed alpha
Helix 59	AG5	C	292	313	Right-handed alpha
Helix 60	AG6	C	319	327	Right-handed alpha
Helix 61	AG7	C	330	344	Right-handed alpha
Helix 62	AG8	C	369	400	Right-handed alpha
Helix 63	AG9	C	400	408	Right-handed alpha
Helix 64	AH1	D	2	14	Right-handed alpha
Helix 65	AH2	D	18	36	Right-handed alpha
Helix 66	AH3	D	37	54	Right-handed alpha
Helix 67	AH4	D	58	73	Right-handed alpha
Helix 68	AH5	D	74	76	Right-handed 310
Helix 69	AH6	D	79	81	Right-handed 310
Helix 70	AH7	D	82	92	Right-handed alpha
Helix 71	AH8	D	100	117	Right-handed alpha
Helix 72	AH9	D	119	129	Right-handed alpha
Helix 73	AI1	D	140	158	Right-handed alpha
Helix 74	AI2	D	162	176	Right-handed alpha
Helix 75	AI3	D	180	198	Right-handed alpha
Helix 76	AI4	D	200	213	Right-handed alpha
Helix 77	AI5	D	218	236	Right-handed alpha
Helix 78	AI6	D	239	250	Right-handed alpha
Helix 79	AI7	D	252	258	Right-handed alpha
Helix 80	AI8	D	260	270	Right-handed alpha
Helix 81	AI9	D	277	286	Right-handed alpha
Helix 82	AJ1	D	298	315	Right-handed alpha
Helix 83	AJ2	D	321	329	Right-handed alpha
Helix 84	AJ3	D	331	345	Right-handed alpha
Helix 85	AJ4	D	366	392	Right-handed alpha
Helix 86	AJ5	D	392	406	Right-handed alpha
Helix 87	AJ6	E	26	30	Right-handed 310
Helix 88	AJ7	E	32	43	Right-handed alpha
Helix 89	AJ8	E	44	48	Right-handed 310
Helix 90	AJ9	E	58	72	Right-handed alpha
Helix 91	AK1	E	112	128	Right-handed alpha
Helix 92	AK2	E	148	162	Right-handed alpha
Helix 93	AK3	E	172	179	Right-handed alpha
Helix 94	AK4	E	207	218	Right-handed alpha
Helix 95	AK5	E	231	247	Right-handed alpha
Helix 96	AK6	E	254	257	Right-handed 310
Helix 97	AK7	E	258	284	Right-handed alpha
Helix 98	AK8	E	289	330	Right-handed alpha
Helix 99	AK9	F	44	62	Right-handed alpha
Helix 100	AL1	F	101	114	Right-handed alpha
Helix 101	AL2	F	134	144	Right-handed alpha
Helix 102	AL3	F	193	209	Right-handed alpha
Helix 103	AL4	F	217	248	Right-handed alpha
Helix 104	AL5	F	254	265	Right-handed alpha
Helix 105	AL6	F	272	313	Right-handed alpha
Helix 106	AL7	G	8	20	Right-handed alpha
Helix 107	AL8	G	24	37	Right-handed alpha
Helix 108	AL9	G	43	48	Right-handed alpha
Helix 109	AM1	G	49	58	Right-handed alpha
Helix 110	AM2	G	61	73	Right-handed alpha
Helix 111	AM3	G	74	81	Right-handed alpha
Helix 112	AM4	G	89	108	Right-handed alpha
Helix 113	AM5	G	113	120	Right-handed alpha
Helix 114	AM6	G	124	138	Right-handed alpha
Helix 115	AM7	G	165	220	Right-handed alpha
Helix 116	AM8	H	11	26	Right-handed alpha
Helix 117	AM9	H	33	47	Right-handed alpha
Helix 118	AN1	H	49	60	Right-handed alpha
Helix 119	AN2	H	61	68	Right-handed alpha
Helix 120	AN3	H	68	84	Right-handed alpha
Helix 121	AN4	H	85	96	Right-handed alpha
Helix 122	AN5	H	102	124	Right-handed alpha
Helix 123	AN6	H	130	138	Right-handed alpha
Helix 124	AN7	H	140	150	Right-handed alpha
Helix 125	AN8	H	192	209	Right-handed alpha
Helix 126	AN9	I	13	27	Right-handed alpha
Helix 127	AO1	I	45	53	Right-handed alpha
Helix 128	AO2	I	55	62	Right-handed alpha
Helix 129	AO3	I	78	92	Right-handed alpha
Helix 130	AO4	I	100	112	Right-handed alpha
Helix 131	AO5	I	113	127	Right-handed alpha
Helix 132	AO6	I	132	143	Right-handed alpha
Helix 133	AO7	I	145	164	Right-handed alpha
Helix 134	AO8	I	166	170	Right-handed 310
Helix 135	AO9	I	173	183	Right-handed alpha
Helix 136	AP1	I	191	203	Right-handed alpha
Helix 137	AP2	I	206	217	Right-handed alpha
Helix 138	AP3	I	218	220	Right-handed 310
Helix 139	AP4	I	221	225	Right-handed 310
Helix 140	AP5	I	228	236	Right-handed alpha
Helix 141	AP6	I	242	250	Right-handed alpha
Helix 142	AP7	L	26	46	Right-handed alpha
Helix 143	AP8	L	53	67	Right-handed alpha
Helix 144	AP9	L	69	88	Right-handed alpha
Helix 145	AQ1	L	88	96	Right-handed alpha
Helix 146	AQ2	L	100	135	Right-handed alpha
Helix 147	AQ3	L	138	151	Right-handed alpha
Helix 148	AQ4	L	156	175	Right-handed alpha
Helix 149	AQ5	L	180	195	Right-handed alpha
Helix 150	AQ6	L	199	228	Right-handed alpha
Helix 151	AQ7	L	232	252	Right-handed alpha
Helix 152	AQ8	L	257	280	Right-handed alpha
Helix 153	AQ9	L	284	290	Right-handed alpha
Helix 154	AR1	L	292	304	Right-handed alpha
Helix 155	AR2	L	308	329	Right-handed alpha
Helix 156	AR3	L	337	359	Right-handed alpha
Helix 157	AR4	L	363	378	Right-handed alpha
Helix 158	AR5	L	384	398	Right-handed alpha
Helix 159	AR6	L	404	421	Right-handed alpha
Helix 160	AR7	L	424	441	Right-handed alpha
Helix 161	AR8	L	448	462	Right-handed alpha
Helix 162	AR9	L	464	494	Right-handed alpha
Helix 163	AS1	L	525	542	Right-handed alpha
Helix 164	AS2	L	598	608	Right-handed alpha
Helix 165	AS3	L	612	619	Right-handed alpha
Helix 166	AS4	L	625	632	Right-handed alpha
Helix 167	AS5	L	664	668	Right-handed 310
Helix 168	AS6	L	687	714	Right-handed alpha
Helix 169	AS7	L	721	726	Right-handed alpha
Helix 170	AS8	L	727	730	Right-handed 310
Helix 171	AS9	L	737	744	Right-handed alpha
Helix 172	AT1	L	746	751	Right-handed 310
Helix 173	AT2	M	10	27	Right-handed alpha
Helix 174	AT3	M	45	53	Right-handed alpha
Helix 175	AT4	M	56	61	Right-handed alpha
Helix 176	AT5	M	64	68	Right-handed 310
Helix 177	AT6	M	78	92	Right-handed alpha
Helix 178	AT7	M	100	112	Right-handed alpha
Helix 179	AT8	M	113	128	Right-handed alpha
Helix 180	AT9	M	132	143	Right-handed alpha
Helix 181	AU1	M	145	164	Right-handed alpha
Helix 182	AU2	M	166	170	Right-handed 310
Helix 183	AU3	M	173	183	Right-handed alpha
Helix 184	AU4	M	191	204	Right-handed alpha
Helix 185	AU5	M	205	208	Right-handed 310
Helix 186	AU6	M	209	217	Right-handed alpha
Helix 187	AU7	M	218	220	Right-handed 310
Helix 188	AU8	M	230	237	Right-handed alpha
Helix 189	AU9	M	244	250	Right-handed alpha
Helix 190	AV1	R	53	58	Right-handed alpha
Helix 191	AV2	R	81	88	Right-handed alpha
Helix 192	AV3	N	22	34	Right-handed alpha
Helix 193	AV4	N	56	60	Right-handed 310

There are 28 sheets in PDB entry 8H38. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	403	first strand
Strand 2	A	417	421	parallel
Strand 3	A	459	462	anti-parallel
Strand 4	A	451	454	anti-parallel
Strand 5	C	314	318	parallel
Strand 6	C	357	360	anti-parallel
Strand 7	C	349	352	anti-parallel
Strand 8	H	125	129	parallel
Strand 9	H	161	163	anti-parallel
Strand 10	H	154	156	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	370	first strand
Strand 2	B	408	409	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	358	359	first strand
Strand 2	D	316	320	anti-parallel
Strand 3	G	141	146	parallel
Strand 4	G	151	157	anti-parallel
Strand 5	G	110	112	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	221	223	first strand
Strand 2	E	182	188	anti-parallel
Strand 3	E	166	171	anti-parallel
Strand 4	E	132	139	parallel
Strand 5	E	78	86	anti-parallel
Strand 6	E	89	96	anti-parallel
Strand 7	E	54	57	parallel
Strand 8	E	225	227	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	186	first strand
Strand 2	F	165	175	anti-parallel
Strand 3	F	150	154	anti-parallel
Strand 4	F	120	127	parallel
Strand 5	F	69	77	anti-parallel
Strand 6	F	80	88	anti-parallel
Strand 7	F	40	43	parallel
Strand 8	F	189	190	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	94	first strand
Strand 2	F	97	100	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	40	44	first strand
Strand 2	I	33	37	anti-parallel
Strand 3	I	71	73	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	580	586	first strand
Strand 2	I	266	275	anti-parallel
Strand 3	I	283	288	anti-parallel
Strand 4	I	295	298	anti-parallel
Strand 5	I	592	593	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	309	312	first strand
Strand 2	I	318	321	anti-parallel
Strand 3	I	350	353	anti-parallel
Strand 4	I	360	362	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	374	378	first strand
Strand 2	I	381	385	anti-parallel
Strand 3	I	399	403	anti-parallel
Strand 4	I	408	411	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	423	427	first strand
Strand 2	I	430	434	anti-parallel
Strand 3	I	439	443	anti-parallel
Strand 4	I	448	451	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	463	467	first strand
Strand 2	I	470	474	anti-parallel
Strand 3	I	499	503	anti-parallel
Strand 4	I	508	511	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	527	530	first strand
Strand 2	I	533	540	anti-parallel
Strand 3	I	548	554	anti-parallel
Strand 4	I	561	567	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	502	503	first strand
Strand 2	R	22	27	parallel
Strand 3	L	557	561	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	506	509	first strand
Strand 2	R	30	34	parallel
Strand 3	L	547	549	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	645	646	first strand
Strand 2	L	659	660	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	40	44	first strand
Strand 2	M	33	37	anti-parallel
Strand 3	M	71	73	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	295	297	first strand
Strand 2	M	286	288	anti-parallel
Strand 3	M	266	272	anti-parallel
Strand 4	M	580	586	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	274	275	first strand
Strand 2	M	283	284	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	309	312	first strand
Strand 2	M	318	321	anti-parallel
Strand 3	M	350	354	anti-parallel
Strand 4	M	359	363	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	324	325	first strand
Strand 2	M	345	346	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	374	378	first strand
Strand 2	M	381	385	anti-parallel
Strand 3	M	400	403	anti-parallel
Strand 4	M	408	411	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	423	427	first strand
Strand 2	M	430	434	anti-parallel
Strand 3	M	439	443	anti-parallel
Strand 4	M	448	451	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	463	467	first strand
Strand 2	M	470	474	anti-parallel
Strand 3	M	499	503	anti-parallel
Strand 4	M	508	511	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	527	530	first strand
Strand 2	M	533	541	anti-parallel
Strand 3	M	547	555	anti-parallel
Strand 4	M	560	566	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	78	80	first strand
Strand 2	R	70	73	anti-parallel
Strand 3	R	103	106	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	13	16	first strand
Strand 2	N	2	5	anti-parallel
Strand 3	N	66	67	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	44	45	first strand
Strand 2	N	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H38

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H38