Analysis of interatomic Contacts of Structural Units in PDB entry:
8H3C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H3C entry

There are 7 chains in PDB entry 8H3C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 3LYS 241
B
GLU 3ILE 240
C
GLU 3ILE 240
D
GLU 3LYS 241
E
LEU 6ILE 240
F
SER 2ILE 11
G
SER 2ILE 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8H3C. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
30 34Right-handed 310
Helix 2
AA2
A
89 93Right-handed 310
Helix 3
AA3
A
213 217Right-handed 310
Helix 4
AA4
B
30 34Right-handed 310
Helix 5
AA5
B
89 93Right-handed 310
Helix 6
AA6
B
213 217Right-handed 310
Helix 7
AA7
C
30 34Right-handed 310
Helix 8
AA8
C
89 93Right-handed 310
Helix 9
AA9
C
184 186Right-handed 310
Helix 10
AB1
C
213 217Right-handed 310
Helix 11
AB2
D
30 34Right-handed 310
Helix 12
AB3
D
89 93Right-handed 310
Helix 13
AB4
D
213 217Right-handed 310
Helix 14
AB5
E
30 34Right-handed 310
Helix 15
AB6
E
213 217Right-handed 310
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There are 23 sheets in PDB entry 8H3C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
5 9first strand
Strand 2
A
20 27anti-parallel
Strand 3
A
80 85anti-parallel
Strand 4
A
70 75anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
12 14first strand
Strand 2
A
112 116parallel
Strand 3
A
94 100anti-parallel
Strand 4
A
36 41anti-parallel
Strand 5
A
47 53anti-parallel
Strand 6
A
60 62anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
138 141first strand
Strand 2
A
153 159anti-parallel
Strand 3
A
204 209anti-parallel
Strand 4
A
196 201anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
144 146first strand
Strand 2
A
236 239parallel
Strand 3
A
219 224anti-parallel
Strand 4
A
167 172anti-parallel
Strand 5
A
178 183anti-parallel
Strand 6
A
187 188anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
144 146first strand
Strand 2
A
236 239parallel
Strand 3
A
219 224anti-parallel
Strand 4
A
231 232anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
5 9first strand
Strand 2
B
20 27anti-parallel
Strand 3
B
80 85anti-parallel
Strand 4
B
70 75anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
12 14first strand
Strand 2
B
112 116parallel
Strand 3
B
94 100anti-parallel
Strand 4
B
36 41anti-parallel
Strand 5
B
47 53anti-parallel
Strand 6
B
60 62anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
138 141first strand
Strand 2
B
153 159anti-parallel
Strand 3
B
204 209anti-parallel
Strand 4
B
196 201anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
144 146first strand
Strand 2
B
236 239parallel
Strand 3
B
219 224anti-parallel
Strand 4
B
167 172anti-parallel
Strand 5
B
179 183anti-parallel
Strand 6
B
187 188anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
5 9first strand
Strand 2
C
20 27anti-parallel
Strand 3
C
80 85anti-parallel
Strand 4
C
70 75anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
12 14first strand
Strand 2
C
112 116parallel
Strand 3
C
94 100anti-parallel
Strand 4
C
36 41anti-parallel
Strand 5
C
47 53anti-parallel
Strand 6
C
60 62anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
138 141first strand
Strand 2
C
153 159anti-parallel
Strand 3
C
204 209anti-parallel
Strand 4
C
196 201anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
144 146first strand
Strand 2
C
236 239parallel
Strand 3
C
219 224anti-parallel
Strand 4
C
167 172anti-parallel
Strand 5
C
178 183anti-parallel
Strand 6
C
187 188anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
5 9first strand
Strand 2
D
20 27anti-parallel
Strand 3
D
80 85anti-parallel
Strand 4
D
70 75anti-parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
12 14first strand
Strand 2
D
112 116parallel
Strand 3
D
94 100anti-parallel
Strand 4
D
36 41anti-parallel
Strand 5
D
47 53anti-parallel
Strand 6
D
60 62anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
138 141first strand
Strand 2
D
153 159anti-parallel
Strand 3
D
204 209anti-parallel
Strand 4
D
196 201anti-parallel
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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
144 146first strand
Strand 2
D
236 239parallel
Strand 3
D
219 224anti-parallel
Strand 4
D
167 172anti-parallel
Strand 5
D
179 183anti-parallel
Strand 6
D
187 188anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
144 146first strand
Strand 2
D
236 239parallel
Strand 3
D
219 224anti-parallel
Strand 4
D
231 232anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
7 9first strand
Strand 2
E
20 25anti-parallel
Strand 3
E
80 85anti-parallel
Strand 4
E
70 75anti-parallel
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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
60 62first strand
Strand 2
E
47 53anti-parallel
Strand 3
E
36 41anti-parallel
Strand 4
E
94 100anti-parallel
Strand 5
E
112 114anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
138 141first strand
Strand 2
E
153 159anti-parallel
Strand 3
E
204 209anti-parallel
Strand 4
E
196 201anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
144 146first strand
Strand 2
E
237 239parallel
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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
187 188first strand
Strand 2
E
179 183anti-parallel
Strand 3
E
167 172anti-parallel
Strand 4
E
219 224anti-parallel
Strand 5
E
231 232anti-parallel
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