Analysis of interatomic Contacts of Structural Units in PDB entry:
8H3D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H3D entry

There are 3 chains in PDB entry 8H3D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 27	GLU 1144
B	ALA 27	GLU 1144
C	ALA 27	GLU 1144

There are 77 helices in PDB entry 8H3D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	294	301	Right-handed alpha
Helix 2	AA2	A	337	343	Right-handed alpha
Helix 3	AA3	A	364	369	Right-handed 310
Helix 4	AA4	A	383	389	Right-handed 310
Helix 5	AA5	A	406	410	Right-handed 310
Helix 6	AA6	A	737	743	Right-handed alpha
Helix 7	AA7	A	747	754	Right-handed alpha
Helix 8	AA8	A	759	770	Right-handed alpha
Helix 9	AA9	A	773	778	Right-handed alpha
Helix 10	AB1	A	778	783	Right-handed alpha
Helix 11	AB2	A	811	815	Right-handed 310
Helix 12	AB3	A	817	822	Right-handed alpha
Helix 13	AB4	A	848	855	Right-handed alpha
Helix 14	AB5	A	866	874	Right-handed alpha
Helix 15	AB6	A	886	890	Right-handed 310
Helix 16	AB7	A	897	908	Right-handed alpha
Helix 17	AB8	A	913	918	Right-handed alpha
Helix 18	AB9	A	919	941	Right-handed alpha
Helix 19	AC1	A	960	965	Right-handed alpha
Helix 20	AC2	A	988	993	Right-handed alpha
Helix 21	AC3	A	995	1000	Right-handed alpha
Helix 22	AC4	A	1001	1019	Right-handed alpha
Helix 23	AC5	A	1021	1032	Right-handed alpha
Helix 24	AC6	B	294	304	Right-handed alpha
Helix 25	AC7	B	338	343	Right-handed alpha
Helix 26	AC8	B	349	353	Right-handed 310
Helix 27	AC9	B	366	370	Right-handed 310
Helix 28	AD1	B	416	422	Right-handed alpha
Helix 29	AD2	B	737	743	Right-handed alpha
Helix 30	AD3	B	749	754	Right-handed alpha
Helix 31	AD4	B	755	757	Right-handed 310
Helix 32	AD5	B	760	765	Right-handed alpha
Helix 33	AD6	B	772	777	Right-handed alpha
Helix 34	AD7	B	777	782	Right-handed alpha
Helix 35	AD8	B	811	815	Right-handed 310
Helix 36	AD9	B	818	823	Right-handed alpha
Helix 37	AE1	B	852	856	Right-handed 310
Helix 38	AE2	B	876	881	Right-handed alpha
Helix 39	AE3	B	886	890	Right-handed 310
Helix 40	AE4	B	897	907	Right-handed alpha
Helix 41	AE5	B	913	918	Right-handed alpha
Helix 42	AE6	B	919	931	Right-handed alpha
Helix 43	AE7	B	932	939	Right-handed alpha
Helix 44	AE8	B	949	965	Right-handed alpha
Helix 45	AE9	B	966	968	Right-handed 310
Helix 46	AF1	B	978	983	Right-handed alpha
Helix 47	AF2	B	985	993	Right-handed alpha
Helix 48	AF3	B	993	1003	Right-handed alpha
Helix 49	AF4	B	1005	1015	Right-handed alpha
Helix 50	AF5	B	1016	1033	Right-handed alpha
Helix 51	AF6	C	294	304	Right-handed alpha
Helix 52	AF7	C	338	343	Right-handed alpha
Helix 53	AF8	C	364	369	Right-handed 310
Helix 54	AF9	C	383	388	Right-handed 310
Helix 55	AG1	C	406	410	Right-handed 310
Helix 56	AG2	C	416	422	Right-handed alpha
Helix 57	AG3	C	439	443	Right-handed 310
Helix 58	AG4	C	737	744	Right-handed alpha
Helix 59	AG5	C	746	751	Right-handed alpha
Helix 60	AG6	C	752	757	Right-handed 310
Helix 61	AG7	C	762	770	Right-handed alpha
Helix 62	AG8	C	772	781	Right-handed alpha
Helix 63	AG9	C	817	822	Right-handed alpha
Helix 64	AH1	C	822	827	Right-handed alpha
Helix 65	AH2	C	850	856	Right-handed alpha
Helix 66	AH3	C	870	875	Right-handed alpha
Helix 67	AH4	C	886	890	Right-handed 310
Helix 68	AH5	C	897	908	Right-handed alpha
Helix 69	AH6	C	913	918	Right-handed alpha
Helix 70	AH7	C	919	932	Right-handed alpha
Helix 71	AH8	C	933	941	Right-handed alpha
Helix 72	AH9	C	949	958	Right-handed alpha
Helix 73	AI1	C	963	968	Right-handed 310
Helix 74	AI2	C	976	984	Right-handed alpha
Helix 75	AI3	C	993	1002	Right-handed alpha
Helix 76	AI4	C	1003	1015	Right-handed alpha
Helix 77	AI5	C	1023	1028	Right-handed alpha

There are 53 sheets in PDB entry 8H3D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	C	565	566	parallel
Strand 3	C	575	576	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	50	first strand
Strand 2	A	275	279	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	271	273	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	237	245	anti-parallel
Strand 3	A	135	143	parallel
Strand 4	A	154	160	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	237	245	anti-parallel
Strand 3	A	101	107	anti-parallel
Strand 4	A	116	121	anti-parallel
Strand 5	A	125	131	anti-parallel
Strand 6	A	169	174	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	188	190	anti-parallel
Strand 3	A	93	96	anti-parallel
Strand 4	A	264	266	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	196	first strand
Strand 2	A	200	204	anti-parallel
Strand 3	A	228	230	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	317	first strand
Strand 2	A	594	599	anti-parallel
Strand 3	A	609	612	anti-parallel
Strand 4	A	649	651	anti-parallel
Strand 5	A	642	644	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	391	402	anti-parallel
Strand 3	A	524	525	anti-parallel
Strand 4	A	361	362	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	391	402	anti-parallel
Strand 3	A	508	516	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	376	380	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	488	489	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	539	542	first strand
Strand 2	A	547	550	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	584	586	first strand
Strand 2	A	573	577	anti-parallel
Strand 3	A	565	567	anti-parallel
Strand 4	B	42	43	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	655	first strand
Strand 2	A	691	696	parallel
Strand 3	A	670	675	anti-parallel
Strand 4	A	664	667	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	714	first strand
Strand 2	A	1073	1075	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	717	728	first strand
Strand 2	A	1059	1070	anti-parallel
Strand 3	A	1047	1056	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	734	736	first strand
Strand 2	A	858	860	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	787	788	first strand
Strand 2	C	701	702	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1122	first strand
Strand 2	A	1087	1090	anti-parallel
Strand 3	A	1081	1082	anti-parallel
Strand 4	A	1133	1134	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1094	1097	first strand
Strand 2	A	1102	1105	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	60	65	anti-parallel
Strand 3	B	265	267	anti-parallel
Strand 4	B	92	94	anti-parallel
Strand 5	B	190	196	anti-parallel
Strand 6	B	201	207	anti-parallel
Strand 7	B	224	229	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	55	first strand
Strand 2	B	271	278	anti-parallel
Strand 3	B	287	290	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	245	anti-parallel
Strand 3	B	135	143	parallel
Strand 4	B	154	160	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	245	anti-parallel
Strand 3	B	101	107	anti-parallel
Strand 4	B	116	121	anti-parallel
Strand 5	B	126	131	anti-parallel
Strand 6	B	169	171	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	319	first strand
Strand 2	B	592	599	anti-parallel
Strand 3	B	609	612	anti-parallel
Strand 4	B	648	651	anti-parallel
Strand 5	B	642	645	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	355	first strand
Strand 2	B	398	402	anti-parallel
Strand 3	B	508	512	anti-parallel
Strand 4	B	433	437	anti-parallel
Strand 5	B	374	378	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	488	489	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	539	542	first strand
Strand 2	B	547	554	anti-parallel
Strand 3	B	584	588	anti-parallel
Strand 4	B	575	577	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	660	first strand
Strand 2	B	693	697	parallel
Strand 3	B	670	673	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	701	702	first strand
Strand 2	C	787	788	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	717	728	first strand
Strand 2	B	1059	1070	anti-parallel
Strand 3	B	1047	1056	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	734	736	first strand
Strand 2	B	858	860	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1122	first strand
Strand 2	B	1086	1090	anti-parallel
Strand 3	B	1081	1083	anti-parallel
Strand 4	B	1133	1134	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1094	1096	first strand
Strand 2	B	1103	1105	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	30	first strand
Strand 2	C	61	65	anti-parallel
Strand 3	C	265	267	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	37	first strand
Strand 2	C	222	229	parallel
Strand 3	C	200	207	anti-parallel
Strand 4	C	190	193	anti-parallel
Strand 5	C	91	92	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	37	first strand
Strand 2	C	222	229	parallel
Strand 3	C	200	207	anti-parallel
Strand 4	C	196	197	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	51	first strand
Strand 2	C	275	279	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	245	anti-parallel
Strand 3	C	135	143	parallel
Strand 4	C	154	160	anti-parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	245	anti-parallel
Strand 3	C	103	107	anti-parallel
Strand 4	C	116	121	anti-parallel
Strand 5	C	125	131	anti-parallel
Strand 6	C	170	174	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	319	first strand
Strand 2	C	592	599	anti-parallel
Strand 3	C	609	612	anti-parallel
Strand 4	C	649	651	anti-parallel
Strand 5	C	642	644	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	393	402	anti-parallel
Strand 3	C	508	516	anti-parallel
Strand 4	C	431	437	anti-parallel
Strand 5	C	376	380	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	453	first strand
Strand 2	C	493	494	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	474	first strand
Strand 2	C	488	489	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	538	539	first strand
Strand 2	C	550	554	anti-parallel
Strand 3	C	585	588	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	654	655	first strand
Strand 2	C	691	696	parallel
Strand 3	C	670	675	anti-parallel
Strand 4	C	664	667	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	717	719	first strand
Strand 2	C	1068	1070	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	722	728	first strand
Strand 2	C	1059	1065	anti-parallel
Strand 3	C	1050	1056	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	734	735	first strand
Strand 2	C	859	860	anti-parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1076	1077	first strand
Strand 2	C	1094	1097	anti-parallel
Strand 3	C	1102	1105	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1120	1122	first strand
Strand 2	C	1087	1090	anti-parallel
Strand 3	C	1081	1082	anti-parallel
Strand 4	C	1133	1134	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H3D

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H3D