Analysis of interatomic Contacts of Structural Units in PDB entry:
8H3E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H3E entry

There are 3 chains in PDB entry 8H3E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 27	GLU 1144
B	ALA 27	GLU 1144
C	ALA 27	GLU 1144

There are 71 helices in PDB entry 8H3E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	296	304	Right-handed alpha
Helix 2	AA2	A	337	343	Right-handed alpha
Helix 3	AA3	A	364	369	Right-handed 310
Helix 4	AA4	A	383	387	Right-handed 310
Helix 5	AA5	A	406	410	Right-handed 310
Helix 6	AA6	A	417	422	Right-handed alpha
Helix 7	AA7	A	616	620	Right-handed 310
Helix 8	AA8	A	737	743	Right-handed alpha
Helix 9	AA9	A	746	754	Right-handed alpha
Helix 10	AB1	A	755	757	Right-handed 310
Helix 11	AB2	A	760	778	Right-handed alpha
Helix 12	AB3	A	818	823	Right-handed alpha
Helix 13	AB4	A	850	855	Right-handed alpha
Helix 14	AB5	A	866	884	Right-handed alpha
Helix 15	AB6	A	897	908	Right-handed alpha
Helix 16	AB7	A	912	918	Right-handed alpha
Helix 17	AB8	A	919	932	Right-handed alpha
Helix 18	AB9	A	932	939	Right-handed alpha
Helix 19	AC1	A	949	954	Right-handed alpha
Helix 20	AC2	A	959	965	Right-handed alpha
Helix 21	AC3	A	976	981	Right-handed alpha
Helix 22	AC4	A	985	1001	Right-handed alpha
Helix 23	AC5	A	1002	1015	Right-handed alpha
Helix 24	AC6	A	1017	1032	Right-handed alpha
Helix 25	AC7	B	296	304	Right-handed alpha
Helix 26	AC8	B	337	343	Right-handed alpha
Helix 27	AC9	B	364	369	Right-handed 310
Helix 28	AD1	B	383	387	Right-handed 310
Helix 29	AD2	B	406	410	Right-handed 310
Helix 30	AD3	B	417	422	Right-handed alpha
Helix 31	AD4	B	616	620	Right-handed 310
Helix 32	AD5	B	737	743	Right-handed alpha
Helix 33	AD6	B	746	754	Right-handed alpha
Helix 34	AD7	B	755	757	Right-handed 310
Helix 35	AD8	B	760	778	Right-handed alpha
Helix 36	AD9	B	818	823	Right-handed alpha
Helix 37	AE1	B	850	856	Right-handed alpha
Helix 38	AE2	B	866	884	Right-handed alpha
Helix 39	AE3	B	897	908	Right-handed alpha
Helix 40	AE4	B	912	918	Right-handed alpha
Helix 41	AE5	B	919	932	Right-handed alpha
Helix 42	AE6	B	932	939	Right-handed alpha
Helix 43	AE7	B	949	954	Right-handed alpha
Helix 44	AE8	B	959	965	Right-handed alpha
Helix 45	AE9	B	976	981	Right-handed alpha
Helix 46	AF1	B	985	1001	Right-handed alpha
Helix 47	AF2	B	1002	1015	Right-handed alpha
Helix 48	AF3	B	1017	1032	Right-handed alpha
Helix 49	AF4	C	296	304	Right-handed alpha
Helix 50	AF5	C	337	343	Right-handed alpha
Helix 51	AF6	C	364	369	Right-handed 310
Helix 52	AF7	C	383	387	Right-handed 310
Helix 53	AF8	C	406	410	Right-handed 310
Helix 54	AF9	C	417	422	Right-handed alpha
Helix 55	AG1	C	616	620	Right-handed 310
Helix 56	AG2	C	737	743	Right-handed alpha
Helix 57	AG3	C	746	754	Right-handed alpha
Helix 58	AG4	C	755	757	Right-handed 310
Helix 59	AG5	C	760	778	Right-handed alpha
Helix 60	AG6	C	818	823	Right-handed alpha
Helix 61	AG7	C	850	855	Right-handed alpha
Helix 62	AG8	C	866	884	Right-handed alpha
Helix 63	AG9	C	897	908	Right-handed alpha
Helix 64	AH1	C	912	918	Right-handed alpha
Helix 65	AH2	C	919	932	Right-handed alpha
Helix 66	AH3	C	932	939	Right-handed alpha
Helix 67	AH4	C	946	954	Right-handed alpha
Helix 68	AH5	C	959	965	Right-handed alpha
Helix 69	AH6	C	976	981	Right-handed alpha
Helix 70	AH7	C	985	1001	Right-handed alpha
Helix 71	AH8	C	1002	1032	Right-handed alpha

There are 45 sheets in PDB entry 8H3E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	60	67	anti-parallel
Strand 3	A	263	268	anti-parallel
Strand 4	A	90	96	anti-parallel
Strand 5	A	186	196	anti-parallel
Strand 6	A	200	212	anti-parallel
Strand 7	A	224	230	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	55	first strand
Strand 2	A	271	279	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	164	first strand
Strand 2	A	132	143	anti-parallel
Strand 3	A	237	245	parallel
Strand 4	A	101	107	anti-parallel
Strand 5	A	117	121	anti-parallel
Strand 6	A	126	129	anti-parallel
Strand 7	A	169	171	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	313	first strand
Strand 2	A	595	599	anti-parallel
Strand 3	A	609	612	anti-parallel
Strand 4	A	649	651	anti-parallel
Strand 5	A	642	644	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	391	402	anti-parallel
Strand 3	A	524	525	anti-parallel
Strand 4	A	361	362	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	391	402	anti-parallel
Strand 3	A	508	517	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	376	380	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	488	489	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	539	543	first strand
Strand 2	A	546	554	anti-parallel
Strand 3	A	584	588	anti-parallel
Strand 4	A	573	577	anti-parallel
Strand 5	A	565	567	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	655	first strand
Strand 2	A	692	695	parallel
Strand 3	A	671	674	anti-parallel
Strand 4	A	664	665	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	702	first strand
Strand 2	B	787	788	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	714	first strand
Strand 2	A	1073	1077	anti-parallel
Strand 3	A	1094	1097	anti-parallel
Strand 4	A	1102	1105	anti-parallel
Strand 5	A	1113	1114	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	717	728	first strand
Strand 2	A	1059	1070	anti-parallel
Strand 3	A	1047	1056	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	733	736	first strand
Strand 2	A	858	861	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	787	788	first strand
Strand 2	C	701	702	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1122	first strand
Strand 2	A	1087	1090	anti-parallel
Strand 3	A	1081	1082	anti-parallel
Strand 4	A	1133	1134	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	60	67	anti-parallel
Strand 3	B	263	268	anti-parallel
Strand 4	B	90	96	anti-parallel
Strand 5	B	186	196	anti-parallel
Strand 6	B	200	212	anti-parallel
Strand 7	B	224	230	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	55	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	160	first strand
Strand 2	B	135	143	anti-parallel
Strand 3	B	237	245	parallel
Strand 4	B	101	107	anti-parallel
Strand 5	B	117	121	anti-parallel
Strand 6	B	126	129	anti-parallel
Strand 7	B	169	171	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	313	first strand
Strand 2	B	595	599	anti-parallel
Strand 3	B	609	612	anti-parallel
Strand 4	B	649	651	anti-parallel
Strand 5	B	642	644	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	391	402	anti-parallel
Strand 3	B	524	525	anti-parallel
Strand 4	B	361	362	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	391	402	anti-parallel
Strand 3	B	508	517	anti-parallel
Strand 4	B	431	437	anti-parallel
Strand 5	B	376	380	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	488	489	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	539	543	first strand
Strand 2	B	546	554	anti-parallel
Strand 3	B	584	588	anti-parallel
Strand 4	B	575	577	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	692	695	parallel
Strand 3	B	671	674	anti-parallel
Strand 4	B	664	665	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	701	702	first strand
Strand 2	C	787	788	parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	712	714	first strand
Strand 2	B	1073	1077	anti-parallel
Strand 3	B	1094	1097	anti-parallel
Strand 4	B	1102	1105	anti-parallel
Strand 5	B	1113	1114	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	717	728	first strand
Strand 2	B	1059	1070	anti-parallel
Strand 3	B	1047	1056	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	734	736	first strand
Strand 2	B	858	860	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1122	first strand
Strand 2	B	1087	1090	anti-parallel
Strand 3	B	1081	1082	anti-parallel
Strand 4	B	1133	1134	parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	60	67	anti-parallel
Strand 3	C	263	268	anti-parallel
Strand 4	C	90	96	anti-parallel
Strand 5	C	186	196	anti-parallel
Strand 6	C	200	212	anti-parallel
Strand 7	C	224	230	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	55	first strand
Strand 2	C	271	279	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 7 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	160	first strand
Strand 2	C	135	143	anti-parallel
Strand 3	C	237	245	parallel
Strand 4	C	101	107	anti-parallel
Strand 5	C	117	121	anti-parallel
Strand 6	C	126	129	anti-parallel
Strand 7	C	169	171	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	313	first strand
Strand 2	C	595	599	anti-parallel
Strand 3	C	609	612	anti-parallel
Strand 4	C	649	651	anti-parallel
Strand 5	C	642	644	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	391	402	anti-parallel
Strand 3	C	524	525	anti-parallel
Strand 4	C	361	362	parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	391	402	anti-parallel
Strand 3	C	508	517	anti-parallel
Strand 4	C	431	437	anti-parallel
Strand 5	C	376	380	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	474	first strand
Strand 2	C	488	489	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	539	543	first strand
Strand 2	C	546	554	anti-parallel
Strand 3	C	584	588	anti-parallel
Strand 4	C	575	577	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	654	655	first strand
Strand 2	C	692	695	parallel
Strand 3	C	671	674	anti-parallel
Strand 4	C	664	665	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	714	first strand
Strand 2	C	1073	1077	anti-parallel
Strand 3	C	1094	1097	anti-parallel
Strand 4	C	1102	1105	anti-parallel
Strand 5	C	1113	1114	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	717	728	first strand
Strand 2	C	1059	1070	anti-parallel
Strand 3	C	1047	1056	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	734	736	first strand
Strand 2	C	858	860	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1120	1122	first strand
Strand 2	C	1087	1090	anti-parallel
Strand 3	C	1081	1082	anti-parallel
Strand 4	C	1133	1134	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H3E

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H3E