Analysis of interatomic Contacts of Structural Units in PDB entry:
8H3Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H3Q entry

There are 3 chains in PDB entry 8H3Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4ALA 1210
C
 MET 25THR 765
E
 LYS 20HIS 108
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 87 helices in PDB entry 8H3Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 18Right-handed alpha
Helix 2
AA2
A
19 38Right-handed alpha
Helix 3
AA3
A
42 59Right-handed alpha
Helix 4
AA4
A
61 79Right-handed alpha
Helix 5
AA5
A
80 97Right-handed alpha
Helix 6
AA6
A
99 117Right-handed alpha
Helix 7
AA7
A
125 142Right-handed alpha
Helix 8
AA8
A
147 165Right-handed alpha
Helix 9
AA9
A
172 181Right-handed alpha
Helix 10
AB1
A
182 186Right-handed 310
Helix 11
AB2
A
188 204Right-handed alpha
Helix 12
AB3
A
207 222Right-handed alpha
Helix 13
AB4
A
228 242Right-handed alpha
Helix 14
AB5
A
245 262Right-handed alpha
Helix 15
AB6
A
266 280Right-handed alpha
Helix 16
AB7
A
285 300Right-handed alpha
Helix 17
AB8
A
346 364Right-handed alpha
Helix 18
AB9
A
367 383Right-handed alpha
Helix 19
AC1
A
389 403Right-handed alpha
Helix 20
AC2
A
423 444Right-handed alpha
Helix 21
AC3
A
447 465Right-handed alpha
Helix 22
AC4
A
472 484Right-handed alpha
Helix 23
AC5
A
492 508Right-handed alpha
Helix 24
AC6
A
509 512Right-handed 310
Helix 25
AC7
A
513 519Right-handed alpha
Helix 26
AC8
A
520 529Right-handed alpha
Helix 27
AC9
A
532 551Right-handed alpha
Helix 28
AD1
A
561 577Right-handed alpha
Helix 29
AD2
A
582 601Right-handed alpha
Helix 30
AD3
A
607 620Right-handed alpha
Helix 31
AD4
A
623 636Right-handed alpha
Helix 32
AD5
A
644 660Right-handed alpha
Helix 33
AD6
A
663 681Right-handed alpha
Helix 34
AD7
A
686 701Right-handed alpha
Helix 35
AD8
A
705 721Right-handed alpha
Helix 36
AD9
A
723 743Right-handed alpha
Helix 37
AE1
A
748 765Right-handed alpha
Helix 38
AE2
A
772 787Right-handed alpha
Helix 39
AE3
A
793 810Right-handed alpha
Helix 40
AE4
A
814 826Right-handed alpha
Helix 41
AE5
A
831 849Right-handed alpha
Helix 42
AE6
A
856 866Right-handed alpha
Helix 43
AE7
A
869 885Right-handed alpha
Helix 44
AE8
A
887 900Right-handed alpha
Helix 45
AE9
A
903 919Right-handed alpha
Helix 46
AF1
A
925 939Right-handed alpha
Helix 47
AF2
A
944 961Right-handed alpha
Helix 48
AF3
A
962 977Right-handed alpha
Helix 49
AF4
A
978 992Right-handed alpha
Helix 50
AF5
A
1000 1015Right-handed alpha
Helix 51
AF6
A
1019 1037Right-handed alpha
Helix 52
AF7
A
1043 1057Right-handed alpha
Helix 53
AF8
A
1078 1096Right-handed alpha
Helix 54
AF9
A
1101 1114Right-handed alpha
Helix 55
AG1
A
1116 1134Right-handed alpha
Helix 56
AG2
A
1135 1140Right-handed alpha
Helix 57
AG3
A
1141 1153Right-handed alpha
Helix 58
AG4
A
1162 1185Right-handed alpha
Helix 59
AG5
A
1203 1210Right-handed alpha
Helix 60
AG6
C
26 46Right-handed alpha
Helix 61
AG7
C
54 66Right-handed alpha
Helix 62
AG8
C
69 96Right-handed alpha
Helix 63
AG9
C
100 134Right-handed alpha
Helix 64
AH1
C
138 151Right-handed alpha
Helix 65
AH2
C
156 175Right-handed alpha
Helix 66
AH3
C
179 195Right-handed alpha
Helix 67
AH4
C
202 225Right-handed alpha
Helix 68
AH5
C
230 250Right-handed alpha
Helix 69
AH6
C
257 277Right-handed alpha
Helix 70
AH7
C
283 291Right-handed alpha
Helix 71
AH8
C
293 304Right-handed alpha
Helix 72
AH9
C
309 329Right-handed alpha
Helix 73
AI1
C
337 359Right-handed alpha
Helix 74
AI2
C
363 379Right-handed alpha
Helix 75
AI3
C
383 398Right-handed alpha
Helix 76
AI4
C
404 421Right-handed alpha
Helix 77
AI5
C
424 441Right-handed alpha
Helix 78
AI6
C
449 460Right-handed alpha
Helix 79
AI7
C
467 495Right-handed alpha
Helix 80
AI8
C
525 541Right-handed alpha
Helix 81
AI9
C
597 608Right-handed alpha
Helix 82
AJ1
C
612 619Right-handed alpha
Helix 83
AJ2
C
625 633Right-handed alpha
Helix 84
AJ3
C
684 713Right-handed alpha
Helix 85
AJ4
C
721 730Right-handed alpha
Helix 86
AJ5
C
739 745Right-handed alpha
Helix 87
AJ6
E
81 88Right-handed alpha
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There are 4 sheets in PDB entry 8H3Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
502 503first strand
Strand 2
E
23 28parallel
Strand 3
C
556 560anti-parallel
Strand 4
C
591 594anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
506 509first strand
Strand 2
E
30 34parallel
Strand 3
C
547 550anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
645 646first strand
Strand 2
C
659 660anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
78 80first strand
Strand 2
E
70 72anti-parallel
Strand 3
E
105 106anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il