Analysis of interatomic Contacts of Structural Units in PDB entry:
8H3R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H3R entry

There are 6 chains in PDB entry 8H3R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	LYS 20	HIS 108
D	LYS 20	HIS 108
C	MET 25	ALA 768
A	GLU 6	PRO 598
B	ARG 7	PRO 598
F	MET 25	ALA 768

There are 92 helices in PDB entry 8H3R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	81	88	Right-handed alpha
Helix 2	AA2	D	53	58	Right-handed alpha
Helix 3	AA3	D	81	86	Right-handed alpha
Helix 4	AA4	D	87	89	Right-handed 310
Helix 5	AA5	C	26	46	Right-handed alpha
Helix 6	AA6	C	54	67	Right-handed alpha
Helix 7	AA7	C	69	96	Right-handed alpha
Helix 8	AA8	C	100	134	Right-handed alpha
Helix 9	AA9	C	138	151	Right-handed alpha
Helix 10	AB1	C	156	175	Right-handed alpha
Helix 11	AB2	C	180	195	Right-handed alpha
Helix 12	AB3	C	199	205	Right-handed alpha
Helix 13	AB4	C	205	228	Right-handed alpha
Helix 14	AB5	C	232	251	Right-handed alpha
Helix 15	AB6	C	257	276	Right-handed alpha
Helix 16	AB7	C	284	290	Right-handed alpha
Helix 17	AB8	C	292	304	Right-handed alpha
Helix 18	AB9	C	308	329	Right-handed alpha
Helix 19	AC1	C	337	360	Right-handed alpha
Helix 20	AC2	C	363	379	Right-handed alpha
Helix 21	AC3	C	383	398	Right-handed alpha
Helix 22	AC4	C	405	421	Right-handed alpha
Helix 23	AC5	C	424	440	Right-handed alpha
Helix 24	AC6	C	448	460	Right-handed alpha
Helix 25	AC7	C	466	495	Right-handed alpha
Helix 26	AC8	C	525	542	Right-handed alpha
Helix 27	AC9	C	597	608	Right-handed alpha
Helix 28	AD1	C	612	617	Right-handed alpha
Helix 29	AD2	C	625	633	Right-handed alpha
Helix 30	AD3	C	684	714	Right-handed alpha
Helix 31	AD4	C	722	730	Right-handed alpha
Helix 32	AD5	C	739	749	Right-handed alpha
Helix 33	AD6	A	13	27	Right-handed alpha
Helix 34	AD7	A	45	53	Right-handed alpha
Helix 35	AD8	A	53	60	Right-handed alpha
Helix 36	AD9	A	64	69	Right-handed 310
Helix 37	AE1	A	78	92	Right-handed alpha
Helix 38	AE2	A	100	112	Right-handed alpha
Helix 39	AE3	A	113	127	Right-handed alpha
Helix 40	AE4	A	132	143	Right-handed alpha
Helix 41	AE5	A	145	164	Right-handed alpha
Helix 42	AE6	A	166	171	Right-handed alpha
Helix 43	AE7	A	173	183	Right-handed alpha
Helix 44	AE8	A	191	206	Right-handed alpha
Helix 45	AE9	A	209	226	Right-handed alpha
Helix 46	AF1	A	228	237	Right-handed alpha
Helix 47	AF2	A	242	251	Right-handed alpha
Helix 48	AF3	B	10	27	Right-handed alpha
Helix 49	AF4	B	45	53	Right-handed alpha
Helix 50	AF5	B	53	61	Right-handed alpha
Helix 51	AF6	B	64	68	Right-handed 310
Helix 52	AF7	B	78	92	Right-handed alpha
Helix 53	AF8	B	100	112	Right-handed alpha
Helix 54	AF9	B	113	128	Right-handed alpha
Helix 55	AG1	B	132	143	Right-handed alpha
Helix 56	AG2	B	145	164	Right-handed alpha
Helix 57	AG3	B	173	182	Right-handed alpha
Helix 58	AG4	B	192	204	Right-handed alpha
Helix 59	AG5	B	209	217	Right-handed alpha
Helix 60	AG6	B	221	225	Right-handed 310
Helix 61	AG7	B	230	236	Right-handed alpha
Helix 62	AG8	B	244	250	Right-handed alpha
Helix 63	AG9	F	26	46	Right-handed alpha
Helix 64	AH1	F	48	52	Right-handed 310
Helix 65	AH2	F	54	59	Right-handed alpha
Helix 66	AH3	F	61	67	Right-handed alpha
Helix 67	AH4	F	69	96	Right-handed alpha
Helix 68	AH5	F	100	134	Right-handed alpha
Helix 69	AH6	F	138	151	Right-handed alpha
Helix 70	AH7	F	156	175	Right-handed alpha
Helix 71	AH8	F	180	195	Right-handed alpha
Helix 72	AH9	F	199	205	Right-handed alpha
Helix 73	AI1	F	205	228	Right-handed alpha
Helix 74	AI2	F	232	251	Right-handed alpha
Helix 75	AI3	F	257	276	Right-handed alpha
Helix 76	AI4	F	284	290	Right-handed alpha
Helix 77	AI5	F	292	304	Right-handed alpha
Helix 78	AI6	F	308	329	Right-handed alpha
Helix 79	AI7	F	337	360	Right-handed alpha
Helix 80	AI8	F	363	379	Right-handed alpha
Helix 81	AI9	F	383	398	Right-handed alpha
Helix 82	AJ1	F	405	421	Right-handed alpha
Helix 83	AJ2	F	424	442	Right-handed alpha
Helix 84	AJ3	F	449	461	Right-handed alpha
Helix 85	AJ4	F	466	493	Right-handed alpha
Helix 86	AJ5	F	525	542	Right-handed alpha
Helix 87	AJ6	F	597	608	Right-handed alpha
Helix 88	AJ7	F	612	619	Right-handed alpha
Helix 89	AJ8	F	625	633	Right-handed alpha
Helix 90	AJ9	F	684	712	Right-handed alpha
Helix 91	AK1	F	722	730	Right-handed alpha
Helix 92	AK2	F	739	750	Right-handed alpha

There are 26 sheets in PDB entry 8H3R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	502	503	first strand
Strand 2	E	22	27	parallel
Strand 3	C	557	561	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	33	first strand
Strand 2	C	506	509	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	80	first strand
Strand 2	E	70	72	anti-parallel
Strand 3	E	105	106	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	502	503	first strand
Strand 2	D	22	27	parallel
Strand 3	F	557	561	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	33	first strand
Strand 2	F	506	509	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	80	first strand
Strand 2	D	70	72	anti-parallel
Strand 3	D	105	106	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	644	646	first strand
Strand 2	C	659	661	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	42	first strand
Strand 2	A	34	37	anti-parallel
Strand 3	A	71	73	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	283	288	anti-parallel
Strand 3	A	266	272	anti-parallel
Strand 4	A	580	586	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	283	288	anti-parallel
Strand 3	A	295	298	anti-parallel
Strand 4	A	592	593	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	312	first strand
Strand 2	A	318	321	anti-parallel
Strand 3	A	350	353	anti-parallel
Strand 4	A	360	362	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	325	first strand
Strand 2	A	345	346	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	378	first strand
Strand 2	A	381	385	anti-parallel
Strand 3	A	399	403	anti-parallel
Strand 4	A	408	411	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	426	first strand
Strand 2	A	431	434	anti-parallel
Strand 3	A	439	443	anti-parallel
Strand 4	A	448	451	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	467	first strand
Strand 2	A	470	474	anti-parallel
Strand 3	A	499	503	anti-parallel
Strand 4	A	508	511	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	527	530	first strand
Strand 2	A	533	540	anti-parallel
Strand 3	A	548	555	anti-parallel
Strand 4	A	560	567	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	43	first strand
Strand 2	B	34	37	anti-parallel
Strand 3	B	71	72	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	275	first strand
Strand 2	B	283	288	anti-parallel
Strand 3	B	295	298	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	275	first strand
Strand 2	B	283	288	anti-parallel
Strand 3	B	266	272	anti-parallel
Strand 4	B	580	586	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	312	first strand
Strand 2	B	318	321	anti-parallel
Strand 3	B	351	354	anti-parallel
Strand 4	B	359	362	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	325	first strand
Strand 2	B	345	346	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	378	first strand
Strand 2	B	381	385	anti-parallel
Strand 3	B	400	403	anti-parallel
Strand 4	B	408	411	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	423	427	first strand
Strand 2	B	430	434	anti-parallel
Strand 3	B	439	443	anti-parallel
Strand 4	B	448	451	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	463	467	first strand
Strand 2	B	470	474	anti-parallel
Strand 3	B	499	503	anti-parallel
Strand 4	B	508	511	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	527	530	first strand
Strand 2	B	533	541	anti-parallel
Strand 3	B	547	555	anti-parallel
Strand 4	B	560	565	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	644	646	first strand
Strand 2	F	659	661	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H3R

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H3R