Analysis of interatomic Contacts of Structural Units in PDB entry:
8H3S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H3S entry

There are 3 chains in PDB entry 8H3S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 336	LYS 784
B	ILE 785	HIS 1019
C	ALA 16	SER 247

There are 8 helices in PDB entry 8H3S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	340	346	Right-handed alpha
Helix 2	AA2	A	708	719	Right-handed alpha
Helix 3	AA3	B	937	945	Right-handed alpha
Helix 4	AA4	B	1007	1009	Right-handed 310
Helix 5	AA5	B	1010	1019	Right-handed alpha
Helix 6	AA6	C	61	65	Right-handed 310
Helix 7	AA7	C	167	175	Right-handed alpha
Helix 8	AA8	C	235	245	Right-handed alpha

There are 15 sheets in PDB entry 8H3S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	370	first strand
Strand 2	A	392	395	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	410	first strand
Strand 2	A	476	483	anti-parallel
Strand 3	A	437	442	anti-parallel
Strand 4	A	449	454	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	467	first strand
Strand 2	A	423	427	anti-parallel
Strand 3	A	492	497	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	553	557	first strand
Strand 2	A	611	617	anti-parallel
Strand 3	A	579	583	anti-parallel
Strand 4	A	592	596	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	571	572	first strand
Strand 2	A	626	627	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	688	689	first strand
Strand 2	A	763	767	anti-parallel
Strand 3	A	724	729	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	693	694	first strand
Strand 2	A	699	700	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	740	741	first strand
Strand 2	A	751	752	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	789	790	first strand
Strand 2	B	929	930	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	799	804	first strand
Strand 2	B	808	814	anti-parallel
Strand 3	B	819	823	anti-parallel
Strand 4	B	877	882	anti-parallel
Strand 5	B	855	864	anti-parallel
Strand 6	B	837	841	anti-parallel
Strand 7	B	799	804	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	910	911	first strand
Strand 2	B	932	933	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	954	956	first strand
Strand 2	B	1003	1005	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	974	978	first strand
Strand 2	B	983	988	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	49	first strand
Strand 2	C	39	42	anti-parallel
Strand 3	C	70	73	anti-parallel
Strand 4	C	86	95	anti-parallel
Strand 5	C	109	113	anti-parallel
Strand 6	C	57	60	anti-parallel
Strand 7	C	51	52	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	164	first strand
Strand 2	C	138	143	anti-parallel
Strand 3	C	203	206	anti-parallel
Strand 4	C	209	216	anti-parallel
Strand 5	C	227	231	anti-parallel
Strand 6	C	183	186	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H3S

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H3S