Analysis of interatomic Contacts of Structural Units in PDB entry:
8H3T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H3T entry

There are 2 chains in PDB entry 8H3T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3VAL 361
B
 GLU 3VAL 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8H3T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 27Right-handed alpha
Helix 2
AA2
A
29 39Right-handed alpha
Helix 3
AA3
A
39 54Right-handed alpha
Helix 4
AA4
A
54 59Right-handed alpha
Helix 5
AA5
A
65 74Right-handed alpha
Helix 6
AA6
A
76 89Right-handed alpha
Helix 7
AA7
A
104 109Right-handed alpha
Helix 8
AA8
A
118 127Right-handed alpha
Helix 9
AA9
A
127 135Right-handed alpha
Helix 10
AB1
A
136 144Right-handed alpha
Helix 11
AB2
A
147 153Right-handed alpha
Helix 12
AB3
A
155 163Right-handed alpha
Helix 13
AB4
A
163 180Right-handed alpha
Helix 14
AB5
A
181 189Right-handed alpha
Helix 15
AB6
A
190 194Right-handed 310
Helix 16
AB7
A
205 215Right-handed alpha
Helix 17
AB8
A
231 239Right-handed alpha
Helix 18
AB9
A
241 243Right-handed 310
Helix 19
AC1
A
268 272Right-handed 310
Helix 20
AC2
A
273 288Right-handed alpha
Helix 21
AC3
A
309 322Right-handed alpha
Helix 22
AC4
A
328 339Right-handed alpha
Helix 23
AC5
B
6 27Right-handed alpha
Helix 24
AC6
B
29 39Right-handed alpha
Helix 25
AC7
B
39 53Right-handed alpha
Helix 26
AC8
B
54 60Right-handed alpha
Helix 27
AC9
B
65 74Right-handed alpha
Helix 28
AD1
B
76 89Right-handed alpha
Helix 29
AD2
B
104 109Right-handed alpha
Helix 30
AD3
B
118 126Right-handed alpha
Helix 31
AD4
B
127 135Right-handed alpha
Helix 32
AD5
B
136 144Right-handed alpha
Helix 33
AD6
B
147 153Right-handed alpha
Helix 34
AD7
B
155 163Right-handed alpha
Helix 35
AD8
B
163 179Right-handed alpha
Helix 36
AD9
B
181 189Right-handed alpha
Helix 37
AE1
B
190 194Right-handed 310
Helix 38
AE2
B
205 215Right-handed alpha
Helix 39
AE3
B
231 239Right-handed alpha
Helix 40
AE4
B
241 243Right-handed 310
Helix 41
AE5
B
268 272Right-handed 310
Helix 42
AE6
B
273 288Right-handed alpha
Helix 43
AE7
B
309 322Right-handed alpha
Helix 44
AE8
B
328 338Right-handed alpha
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There are 4 sheets in PDB entry 8H3T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
101 102anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 248first strand
Strand 2
A
219 223parallel
Strand 3
A
196 200parallel
Strand 4
A
262 266parallel
Strand 5
A
293 298parallel
Strand 6
A
354 360anti-parallel
Strand 7
A
341 348anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 95first strand
Strand 2
B
101 102anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 248first strand
Strand 2
B
219 223parallel
Strand 3
B
196 200parallel
Strand 4
B
262 266parallel
Strand 5
B
293 298parallel
Strand 6
B
354 360anti-parallel
Strand 7
B
341 348anti-parallel
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