Analysis of interatomic Contacts of Structural Units in PDB entry:
8H3Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H3Y entry

There are 6 chains in PDB entry 8H3Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 34	ASP 397
B	VAL 34	ASP 397
D	GLN 1	SER 121
E	GLN 1	SER 121
F	VAL 2	SER 121
C	VAL 34	VAL 258

There are 48 helices in PDB entry 8H3Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	54	Right-handed alpha
Helix 2	AA2	A	96	99	Right-handed 310
Helix 3	AA3	A	128	141	Right-handed alpha
Helix 4	AA4	A	142	144	Right-handed 310
Helix 5	AA5	A	147	154	Right-handed alpha
Helix 6	AA6	A	177	185	Right-handed alpha
Helix 7	AA7	A	233	250	Right-handed alpha
Helix 8	AA8	A	253	256	Right-handed 310
Helix 9	AA9	A	275	290	Right-handed alpha
Helix 10	AB1	A	291	294	Right-handed 310
Helix 11	AB2	A	309	313	Right-handed 310
Helix 12	AB3	A	344	354	Right-handed alpha
Helix 13	AB4	A	378	389	Right-handed alpha
Helix 14	AB5	A	392	396	Right-handed 310
Helix 15	AB6	B	44	54	Right-handed alpha
Helix 16	AB7	B	96	99	Right-handed 310
Helix 17	AB8	B	128	141	Right-handed alpha
Helix 18	AB9	B	142	144	Right-handed 310
Helix 19	AC1	B	150	153	Right-handed 310
Helix 20	AC2	B	177	185	Right-handed alpha
Helix 21	AC3	B	233	250	Right-handed alpha
Helix 22	AC4	B	253	256	Right-handed 310
Helix 23	AC5	B	275	290	Right-handed alpha
Helix 24	AC6	B	291	294	Right-handed 310
Helix 25	AC7	B	344	354	Right-handed alpha
Helix 26	AC8	B	378	389	Right-handed alpha
Helix 27	AC9	B	392	396	Right-handed 310
Helix 28	AD1	D	28	32	Right-handed 310
Helix 29	AD2	D	87	91	Right-handed 310
Helix 30	AD3	E	28	32	Right-handed 310
Helix 31	AD4	E	62	65	Right-handed 310
Helix 32	AD5	E	87	91	Right-handed 310
Helix 33	AD6	F	28	32	Right-handed 310
Helix 34	AD7	F	62	65	Right-handed 310
Helix 35	AD8	F	87	91	Right-handed 310
Helix 36	AD9	C	44	54	Right-handed alpha
Helix 37	AE1	C	96	99	Right-handed 310
Helix 38	AE2	C	128	141	Right-handed alpha
Helix 39	AE3	C	142	144	Right-handed 310
Helix 40	AE4	C	150	154	Right-handed alpha
Helix 41	AE5	C	177	185	Right-handed alpha
Helix 42	AE6	C	233	250	Right-handed alpha
Helix 43	AE7	C	253	256	Right-handed 310
Helix 44	AE8	C	275	289	Right-handed alpha
Helix 45	AE9	C	290	294	Right-handed 310
Helix 46	AF1	C	344	354	Right-handed alpha
Helix 47	AF2	C	378	389	Right-handed alpha
Helix 48	AF3	C	392	396	Right-handed 310

There are 15 sheets in PDB entry 8H3Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	60	65	parallel
Strand 3	A	70	77	anti-parallel
Strand 4	A	91	94	anti-parallel
Strand 5	A	101	105	anti-parallel
Strand 6	A	109	116	anti-parallel
Strand 7	A	119	126	anti-parallel
Strand 8	A	170	176	anti-parallel
Strand 9	A	155	159	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	82	85	anti-parallel
Strand 3	A	258	266	parallel
Strand 4	A	218	226	parallel
Strand 5	A	300	305	parallel
Strand 6	A	333	337	parallel
Strand 7	A	315	319	anti-parallel
Strand 8	A	195	197	parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	39	first strand
Strand 2	B	60	66	parallel
Strand 3	B	69	77	anti-parallel
Strand 4	B	88	94	anti-parallel
Strand 5	B	101	106	anti-parallel
Strand 6	B	109	116	anti-parallel
Strand 7	B	119	126	anti-parallel
Strand 8	B	170	176	anti-parallel
Strand 9	B	155	159	anti-parallel

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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	39	first strand
Strand 2	B	60	66	parallel
Strand 3	B	69	77	anti-parallel
Strand 4	B	88	94	anti-parallel
Strand 5	B	82	85	anti-parallel
Strand 6	B	258	266	parallel
Strand 7	B	218	226	parallel
Strand 8	B	300	305	parallel
Strand 9	B	333	337	parallel
Strand 10	B	315	318	anti-parallel
Strand 11	B	195	196	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	115	120	parallel
Strand 3	D	92	100	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	115	120	parallel
Strand 3	D	92	100	anti-parallel
Strand 4	D	107	111	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	115	120	parallel
Strand 3	E	92	100	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	46	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	115	120	parallel
Strand 3	E	92	100	anti-parallel
Strand 4	E	107	111	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	115	120	parallel
Strand 3	F	92	100	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	46	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	115	120	parallel
Strand 3	F	92	100	anti-parallel
Strand 4	F	107	111	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	39	first strand
Strand 2	C	60	65	parallel
Strand 3	C	70	77	anti-parallel
Strand 4	C	88	94	anti-parallel
Strand 5	C	101	105	anti-parallel
Strand 6	C	109	116	anti-parallel
Strand 7	C	119	126	anti-parallel
Strand 8	C	170	176	anti-parallel
Strand 9	C	155	159	anti-parallel

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There are 11 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	39	first strand
Strand 2	C	60	65	parallel
Strand 3	C	70	77	anti-parallel
Strand 4	C	88	94	anti-parallel
Strand 5	C	82	85	anti-parallel
Strand 6	C	258	266	parallel
Strand 7	C	218	226	parallel
Strand 8	C	300	305	parallel
Strand 9	C	333	337	parallel
Strand 10	C	315	318	anti-parallel
Strand 11	C	195	196	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H3Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H3Y