Analysis of interatomic Contacts of Structural Units in PDB entry:
8H40

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H40 entry

There are 11 chains in PDB entry 8H40 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	A 58	A 123
2	T 3	T 68
A	ALA 24	VAL 1100
B	MET 1	TYR 1254
C	GLN 3	SER 228
D	GLN 3	SER 228
E	THR 6	SER 625
F	GLN 13	THR 70
G	TYR 77	ARG 390
X	VAL 25	ARG 220
Y	VAL 25	ARG 220

There are112 helices in PDB entry 8H40. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	44	Right-handed alpha
Helix 2	AA2	A	46	54	Right-handed alpha
Helix 3	AA3	A	80	87	Right-handed alpha
Helix 4	AA4	A	205	210	Right-handed alpha
Helix 5	AA5	A	249	263	Right-handed alpha
Helix 6	AA6	A	264	267	Right-handed 310
Helix 7	AA7	A	270	282	Right-handed alpha
Helix 8	AA8	A	293	309	Right-handed alpha
Helix 9	AA9	A	319	321	Right-handed 310
Helix 10	AB1	A	327	352	Right-handed alpha
Helix 11	AB2	A	368	380	Right-handed alpha
Helix 12	AB3	A	392	400	Right-handed alpha
Helix 13	AB4	A	483	487	Right-handed 310
Helix 14	AB5	A	544	548	Right-handed 310
Helix 15	AB6	A	549	561	Right-handed alpha
Helix 16	AB7	A	579	587	Right-handed alpha
Helix 17	AB8	A	613	619	Right-handed alpha
Helix 18	AB9	A	706	711	Right-handed alpha
Helix 19	AC1	A	782	793	Right-handed alpha
Helix 20	AC2	A	867	871	Right-handed 310
Helix 21	AC3	A	895	910	Right-handed alpha
Helix 22	AC4	A	927	941	Right-handed alpha
Helix 23	AC5	A	987	990	Right-handed 310
Helix 24	AC6	A	1018	1023	Right-handed alpha
Helix 25	AC7	A	1031	1039	Right-handed alpha
Helix 26	AC8	A	1044	1058	Right-handed alpha
Helix 27	AC9	A	1067	1079	Right-handed alpha
Helix 28	AD1	B	11	24	Right-handed alpha
Helix 29	AD2	B	27	48	Right-handed alpha
Helix 30	AD3	B	61	82	Right-handed alpha
Helix 31	AD4	B	86	95	Right-handed alpha
Helix 32	AD5	B	95	115	Right-handed alpha
Helix 33	AD6	B	120	125	Right-handed alpha
Helix 34	AD7	B	134	142	Right-handed alpha
Helix 35	AD8	B	168	204	Right-handed alpha
Helix 36	AD9	B	234	239	Right-handed alpha
Helix 37	AE1	B	265	274	Right-handed alpha
Helix 38	AE2	B	295	300	Right-handed alpha
Helix 39	AE3	B	314	328	Right-handed alpha
Helix 40	AE4	B	697	703	Right-handed alpha
Helix 41	AE5	B	1009	1020	Right-handed alpha
Helix 42	AE6	B	1089	1100	Right-handed alpha
Helix 43	AE7	B	1105	1133	Right-handed alpha
Helix 44	AE8	B	1137	1149	Right-handed alpha
Helix 45	AE9	B	1170	1184	Right-handed alpha
Helix 46	AF1	B	1206	1214	Right-handed alpha
Helix 47	AF2	B	1217	1226	Right-handed alpha
Helix 48	AF3	B	1237	1242	Right-handed alpha
Helix 49	AF4	B	1247	1251	Right-handed 310
Helix 50	AF5	C	31	45	Right-handed alpha
Helix 51	AF6	C	74	84	Right-handed alpha
Helix 52	AF7	C	108	112	Right-handed 310
Helix 53	AF8	C	205	222	Right-handed alpha
Helix 54	AF9	C	223	225	Right-handed 310
Helix 55	AG1	D	35	45	Right-handed alpha
Helix 56	AG2	D	74	84	Right-handed alpha
Helix 57	AG3	D	150	155	Right-handed alpha
Helix 58	AG4	D	205	222	Right-handed alpha
Helix 59	AG5	E	18	24	Right-handed alpha
Helix 60	AG6	E	115	118	Right-handed 310
Helix 61	AG7	E	123	130	Right-handed alpha
Helix 62	AG8	E	164	172	Right-handed alpha
Helix 63	AG9	E	189	200	Right-handed alpha
Helix 64	AH1	E	209	215	Right-handed alpha
Helix 65	AH2	E	221	237	Right-handed alpha
Helix 66	AH3	E	240	243	Right-handed 310
Helix 67	AH4	E	253	257	Right-handed 310
Helix 68	AH5	E	270	292	Right-handed alpha
Helix 69	AH6	E	295	315	Right-handed alpha
Helix 70	AH7	E	343	349	Right-handed alpha
Helix 71	AH8	E	376	396	Right-handed alpha
Helix 72	AH9	E	400	411	Right-handed alpha
Helix 73	AI1	E	412	417	Right-handed 310
Helix 74	AI2	E	418	424	Right-handed alpha
Helix 75	AI3	E	460	465	Right-handed alpha
Helix 76	AI4	E	480	492	Right-handed alpha
Helix 77	AI5	E	493	496	Right-handed 310
Helix 78	AI6	E	512	522	Right-handed alpha
Helix 79	AI7	E	539	547	Right-handed alpha
Helix 80	AI8	E	609	624	Right-handed alpha
Helix 81	AI9	F	14	24	Right-handed alpha
Helix 82	AJ1	F	27	45	Right-handed alpha
Helix 83	AJ2	F	56	67	Right-handed alpha
Helix 84	AJ3	G	81	91	Right-handed alpha
Helix 85	AJ4	G	98	124	Right-handed alpha
Helix 86	AJ5	G	140	163	Right-handed alpha
Helix 87	AJ6	G	165	177	Right-handed alpha
Helix 88	AJ7	G	179	197	Right-handed alpha
Helix 89	AJ8	G	205	208	Right-handed 310
Helix 90	AJ9	G	209	223	Right-handed alpha
Helix 91	AK1	G	232	253	Right-handed alpha
Helix 92	AK2	G	259	264	Right-handed alpha
Helix 93	AK3	G	269	280	Right-handed alpha
Helix 94	AK4	G	308	327	Right-handed alpha
Helix 95	AK5	G	330	340	Right-handed alpha
Helix 96	AK6	G	350	360	Right-handed alpha
Helix 97	AK7	G	364	377	Right-handed alpha
Helix 98	AK8	G	381	385	Right-handed 310
Helix 99	AK9	X	82	86	Right-handed 310
Helix 100	AL1	X	104	108	Right-handed 310
Helix 101	AL2	X	109	114	Right-handed alpha
Helix 102	AL3	X	115	140	Right-handed alpha
Helix 103	AL4	X	146	152	Right-handed alpha
Helix 104	AL5	X	152	158	Right-handed alpha
Helix 105	AL6	X	177	184	Right-handed alpha
Helix 106	AL7	X	187	198	Right-handed alpha
Helix 107	AL8	Y	104	114	Right-handed alpha
Helix 108	AL9	Y	116	118	Right-handed 310
Helix 109	AM1	Y	119	141	Right-handed alpha
Helix 110	AM2	Y	146	159	Right-handed alpha
Helix 111	AM3	Y	175	180	Right-handed 310
Helix 112	AM4	Y	187	198	Right-handed alpha

There are 49 sheets in PDB entry 8H40. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	64	65	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	98	first strand
Strand 2	A	113	117	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	133	137	anti-parallel
Strand 3	A	384	386	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	326	first strand
Strand 2	A	139	143	anti-parallel
Strand 3	A	401	403	parallel
Strand 4	A	444	447	anti-parallel
Strand 5	A	430	431	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	148	first strand
Strand 2	A	162	166	anti-parallel
Strand 3	A	174	176	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	159	160	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	465	first strand
Strand 2	A	526	527	anti-parallel
Strand 3	A	490	491	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	574	575	first strand
Strand 2	A	914	915	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	591	first strand
Strand 2	A	668	670	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	595	597	first strand
Strand 2	A	662	664	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	850	853	first strand
Strand 2	A	972	985	anti-parallel
Strand 3	A	684	690	anti-parallel
Strand 4	A	883	884	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	850	853	first strand
Strand 2	A	972	985	anti-parallel
Strand 3	A	956	957	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	704	first strand
Strand 2	A	861	865	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	715	716	first strand
Strand 2	A	844	845	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	724	727	first strand
Strand 2	A	832	840	anti-parallel
Strand 3	A	814	820	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	768	770	first strand
Strand 2	A	804	805	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	774	775	first strand
Strand 2	A	799	800	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	E	564	566	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	302	first strand
Strand 2	B	307	308	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	438	439	first strand
Strand 2	B	1001	1002	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	502	503	first strand
Strand 2	B	883	884	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	540	first strand
Strand 2	B	835	837	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	572	574	first strand
Strand 2	B	589	591	anti-parallel
Strand 3	B	793	795	anti-parallel
Strand 4	B	770	772	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	602	603	first strand
Strand 2	B	781	782	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	642	first strand
Strand 2	B	680	681	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	660	661	first strand
Strand 2	B	664	665	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	670	673	first strand
Strand 2	B	685	688	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	765	766	first strand
Strand 2	B	799	800	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	940	942	first strand
Strand 2	B	965	966	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1167	1169	first strand
Strand 2	B	1151	1153	anti-parallel
Strand 3	B	1192	1193	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	C	21	24	anti-parallel
Strand 3	C	193	200	anti-parallel
Strand 4	C	173	177	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	C	21	24	anti-parallel
Strand 3	C	193	200	anti-parallel
Strand 4	C	180	181	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	57	first strand
Strand 2	C	138	140	anti-parallel
Strand 3	C	97	99	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	119	120	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	8	first strand
Strand 2	D	23	25	anti-parallel
Strand 3	D	191	200	anti-parallel
Strand 4	D	173	177	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	8	first strand
Strand 2	D	23	25	anti-parallel
Strand 3	D	191	200	anti-parallel
Strand 4	D	180	183	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	51	first strand
Strand 2	D	144	145	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	57	first strand
Strand 2	D	138	140	anti-parallel
Strand 3	D	97	99	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	88	first strand
Strand 2	D	119	120	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	108	first strand
Strand 2	D	126	129	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	113	first strand
Strand 2	E	245	251	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	260	261	first strand
Strand 2	E	267	268	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	357	360	first strand
Strand 2	E	473	476	anti-parallel
Strand 3	E	428	431	anti-parallel
Strand 4	E	441	444	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	363	364	first strand
Strand 2	E	455	456	parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	586	587	first strand
Strand 2	E	592	593	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	45	46	first strand
Strand 2	X	101	102	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	161	163	first strand
Strand 2	X	168	170	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	53	55	first strand
Strand 2	Y	65	68	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	162	163	first strand
Strand 2	Y	168	169	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H40

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H40