Analysis of interatomic Contacts of Structural Units in PDB entry:
8H41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H41 entry

There are 2 chains in PDB entry 8H41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1ALA 350
B
 HIS -6ALA 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8H41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 15Right-handed 310
Helix 2
AA2
A
16 28Right-handed alpha
Helix 3
AA3
A
29 31Right-handed 310
Helix 4
AA4
A
32 41Right-handed alpha
Helix 5
AA5
A
45 54Right-handed alpha
Helix 6
AA6
A
66 71Right-handed 310
Helix 7
AA7
A
73 94Right-handed alpha
Helix 8
AA8
A
109 125Right-handed alpha
Helix 9
AA9
A
138 142Right-handed 310
Helix 10
AB1
A
149 151Right-handed 310
Helix 11
AB2
A
152 163Right-handed alpha
Helix 12
AB3
A
174 182Right-handed alpha
Helix 13
AB4
A
183 189Right-handed 310
Helix 14
AB5
A
193 209Right-handed alpha
Helix 15
AB6
A
210 215Right-handed alpha
Helix 16
AB7
A
223 227Right-handed 310
Helix 17
AB8
A
229 231Right-handed 310
Helix 18
AB9
A
232 243Right-handed alpha
Helix 19
AC1
A
243 251Right-handed alpha
Helix 20
AC2
A
259 267Right-handed alpha
Helix 21
AC3
A
277 289Right-handed alpha
Helix 22
AC4
A
303 314Right-handed alpha
Helix 23
AC5
A
314 323Right-handed alpha
Helix 24
AC6
A
324 333Right-handed alpha
Helix 25
AC7
A
333 340Right-handed alpha
Helix 26
AC8
B
13 15Right-handed 310
Helix 27
AC9
B
16 28Right-handed alpha
Helix 28
AD1
B
29 31Right-handed 310
Helix 29
AD2
B
32 41Right-handed alpha
Helix 30
AD3
B
45 54Right-handed alpha
Helix 31
AD4
B
66 71Right-handed 310
Helix 32
AD5
B
73 93Right-handed alpha
Helix 33
AD6
B
94 96Right-handed 310
Helix 34
AD7
B
109 125Right-handed alpha
Helix 35
AD8
B
138 142Right-handed 310
Helix 36
AD9
B
149 151Right-handed 310
Helix 37
AE1
B
152 163Right-handed alpha
Helix 38
AE2
B
174 182Right-handed alpha
Helix 39
AE3
B
183 189Right-handed 310
Helix 40
AE4
B
193 209Right-handed alpha
Helix 41
AE5
B
210 215Right-handed alpha
Helix 42
AE6
B
223 227Right-handed 310
Helix 43
AE7
B
229 231Right-handed 310
Helix 44
AE8
B
232 243Right-handed alpha
Helix 45
AE9
B
243 251Right-handed alpha
Helix 46
AF1
B
259 267Right-handed alpha
Helix 47
AF2
B
277 289Right-handed alpha
Helix 48
AF3
B
303 314Right-handed alpha
Helix 49
AF4
B
314 323Right-handed alpha
Helix 50
AF5
B
324 333Right-handed alpha
Helix 51
AF6
B
333 340Right-handed alpha
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There are 6 sheets in PDB entry 8H41. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 11first strand
Strand 2
A
56 63parallel
Strand 3
A
99 101parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
166 168parallel
Strand 3
A
220 222parallel
Strand 4
A
268 271parallel
Strand 5
A
293 294parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 137first strand
Strand 2
A
143 145anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 11first strand
Strand 2
B
56 63parallel
Strand 3
B
99 101parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 131first strand
Strand 2
B
166 168parallel
Strand 3
B
220 222parallel
Strand 4
B
268 271parallel
Strand 5
B
293 294parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 137first strand
Strand 2
B
143 145anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il