Analysis of interatomic Contacts of Structural Units in PDB entry:
8H4D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H4D entry

There are 2 chains in PDB entry 8H4D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2HIS 329
B
 LYS 2HIS 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8H4D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 27Right-handed alpha
Helix 2
AA2
A
30 38Right-handed alpha
Helix 3
AA3
A
55 59Right-handed 310
Helix 4
AA4
A
60 75Right-handed alpha
Helix 5
AA5
A
91 103Right-handed alpha
Helix 6
AA6
A
124 137Right-handed alpha
Helix 7
AA7
A
138 142Right-handed 310
Helix 8
AA8
A
219 228Right-handed alpha
Helix 9
AA9
A
244 246Right-handed 310
Helix 10
AB1
A
247 257Right-handed alpha
Helix 11
AB2
A
281 289Right-handed alpha
Helix 12
AB3
A
297 310Right-handed alpha
Helix 13
AB4
A
315 321Right-handed alpha
Helix 14
AB5
B
20 26Right-handed alpha
Helix 15
AB6
B
30 39Right-handed alpha
Helix 16
AB7
B
55 59Right-handed 310
Helix 17
AB8
B
60 76Right-handed alpha
Helix 18
AB9
B
91 103Right-handed alpha
Helix 19
AC1
B
124 137Right-handed alpha
Helix 20
AC2
B
138 142Right-handed 310
Helix 21
AC3
B
219 228Right-handed alpha
Helix 22
AC4
B
244 246Right-handed 310
Helix 23
AC5
B
247 257Right-handed alpha
Helix 24
AC6
B
281 289Right-handed alpha
Helix 25
AC7
B
297 312Right-handed alpha
Helix 26
AC8
B
315 321Right-handed alpha
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There are 6 sheets in PDB entry 8H4D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 50first strand
Strand 2
A
3 9parallel
Strand 3
A
82 86parallel
Strand 4
A
109 112parallel
Strand 5
A
147 150parallel
Strand 6
A
153 156anti-parallel
Strand 7
A
180 183anti-parallel
Strand 8
A
186 189anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
171 172anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 212first strand
Strand 2
A
232 237parallel
Strand 3
A
260 265parallel
Strand 4
A
291 292parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 50first strand
Strand 2
B
3 9parallel
Strand 3
B
82 86parallel
Strand 4
B
109 112parallel
Strand 5
B
146 150parallel
Strand 6
B
153 156anti-parallel
Strand 7
B
180 183anti-parallel
Strand 8
B
186 189anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 162first strand
Strand 2
B
171 172anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 212first strand
Strand 2
B
232 237parallel
Strand 3
B
260 265parallel
Strand 4
B
291 292parallel
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