Analysis of interatomic Contacts of Structural Units in PDB entry:
8H4H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H4H entry

There are 4 chains in PDB entry 8H4H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
N
 ILE 2VAL 60
N
 ILE 62GLU 487
A
 ARG 4VAL 60
A
 ILE 62ALA 486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 8H4H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
N
14 21Right-handed alpha
Helix 2
AA2
N
34 38Right-handed 310
Helix 3
AA3
N
40 43Right-handed 310
Helix 4
AA4
N
53 55Right-handed 310
Helix 5
AA5
N
61 73Right-handed alpha
Helix 6
AA6
N
87 100Right-handed alpha
Helix 7
AA7
N
115 125Right-handed alpha
Helix 8
AA8
N
145 157Right-handed alpha
Helix 9
AA9
N
169 178Right-handed alpha
Helix 10
AB1
N
178 187Right-handed alpha
Helix 11
AB2
N
200 213Right-handed alpha
Helix 12
AB3
N
236 240Right-handed 310
Helix 13
AB4
N
246 250Right-handed 310
Helix 14
AB5
N
257 272Right-handed alpha
Helix 15
AB6
N
276 297Right-handed alpha
Helix 16
AB7
N
298 302Right-handed 310
Helix 17
AB8
N
319 321Right-handed 310
Helix 18
AB9
N
322 330Right-handed alpha
Helix 19
AC1
N
340 346Right-handed 310
Helix 20
AC2
N
358 369Right-handed alpha
Helix 21
AC3
N
382 389Right-handed alpha
Helix 22
AC4
N
408 411Right-handed 310
Helix 23
AC5
N
412 427Right-handed alpha
Helix 24
AC6
N
428 435Right-handed alpha
Helix 25
AC7
N
449 461Right-handed alpha
Helix 26
AC8
N
476 479Right-handed 310
Helix 27
AC9
N
480 486Right-handed alpha
Helix 28
AD1
A
14 21Right-handed alpha
Helix 29
AD2
A
34 38Right-handed 310
Helix 30
AD3
A
53 55Right-handed 310
Helix 31
AD4
A
61 73Right-handed alpha
Helix 32
AD5
A
87 100Right-handed alpha
Helix 33
AD6
A
115 125Right-handed alpha
Helix 34
AD7
A
145 156Right-handed alpha
Helix 35
AD8
A
169 178Right-handed alpha
Helix 36
AD9
A
178 187Right-handed alpha
Helix 37
AE1
A
200 213Right-handed alpha
Helix 38
AE2
A
236 240Right-handed 310
Helix 39
AE3
A
245 249Right-handed 310
Helix 40
AE4
A
257 272Right-handed alpha
Helix 41
AE5
A
276 297Right-handed alpha
Helix 42
AE6
A
298 303Right-handed 310
Helix 43
AE7
A
319 321Right-handed 310
Helix 44
AE8
A
322 330Right-handed alpha
Helix 45
AE9
A
340 346Right-handed 310
Helix 46
AF1
A
352 354Right-handed 310
Helix 47
AF2
A
358 366Right-handed alpha
Helix 48
AF3
A
382 389Right-handed alpha
Helix 49
AF4
A
412 427Right-handed alpha
Helix 50
AF5
A
428 435Right-handed alpha
Helix 51
AF6
A
449 461Right-handed alpha
Helix 52
AF7
A
471 480Right-handed alpha
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There are 6 sheets in PDB entry 8H4H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
30 32first strand
Strand 2
N
45 51anti-parallel
Strand 3
N
309 315parallel
Strand 4
N
190 196parallel
Strand 5
N
218 224parallel
Strand 6
N
252 256parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
128 132first strand
Strand 2
N
106 111parallel
Strand 3
N
80 84parallel
Strand 4
N
160 161parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
356 357first strand
Strand 2
N
465 469parallel
Strand 3
N
441 445parallel
Strand 4
N
375 379parallel
Strand 5
N
395 396parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
45 51anti-parallel
Strand 3
A
309 315parallel
Strand 4
A
190 196parallel
Strand 5
A
218 224parallel
Strand 6
A
252 256parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 132first strand
Strand 2
A
106 111parallel
Strand 3
A
80 84parallel
Strand 4
A
160 161parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 357first strand
Strand 2
A
466 469parallel
Strand 3
A
442 445parallel
Strand 4
A
376 379parallel
Strand 5
A
395 396parallel
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