Analysis of interatomic Contacts of Structural Units in PDB entry:
8H4J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H4J entry

There are 8 chains in PDB entry 8H4J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	ALA 201
B	GLY 1	ALA 201
C	GLY 1	ALA 201
D	ALA 2	GLN 200
E	ALA 2	ALA 201
F	ALA 2	ALA 201
G	GLY 1	ALA 201
H	ALA 2	GLN 200

There are 66 helices in PDB entry 8H4J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	15	Right-handed 310
Helix 2	AA2	A	16	32	Right-handed alpha
Helix 3	AA3	A	44	46	Right-handed 310
Helix 4	AA4	A	52	60	Right-handed alpha
Helix 5	AA5	A	66	86	Right-handed alpha
Helix 6	AA6	A	101	112	Right-handed alpha
Helix 7	AA7	A	151	163	Right-handed alpha
Helix 8	AA8	A	180	198	Right-handed alpha
Helix 9	AA9	B	12	15	Right-handed 310
Helix 10	AB1	B	16	32	Right-handed alpha
Helix 11	AB2	B	44	46	Right-handed 310
Helix 12	AB3	B	52	60	Right-handed alpha
Helix 13	AB4	B	66	86	Right-handed alpha
Helix 14	AB5	B	101	112	Right-handed alpha
Helix 15	AB6	B	151	163	Right-handed alpha
Helix 16	AB7	B	180	199	Right-handed alpha
Helix 17	AB8	C	12	15	Right-handed 310
Helix 18	AB9	C	16	32	Right-handed alpha
Helix 19	AC1	C	44	46	Right-handed 310
Helix 20	AC2	C	52	60	Right-handed alpha
Helix 21	AC3	C	66	85	Right-handed alpha
Helix 22	AC4	C	101	112	Right-handed alpha
Helix 23	AC5	C	151	163	Right-handed alpha
Helix 24	AC6	C	181	199	Right-handed alpha
Helix 25	AC7	D	12	15	Right-handed 310
Helix 26	AC8	D	16	32	Right-handed alpha
Helix 27	AC9	D	44	46	Right-handed 310
Helix 28	AD1	D	52	60	Right-handed alpha
Helix 29	AD2	D	66	68	Right-handed 310
Helix 30	AD3	D	69	86	Right-handed alpha
Helix 31	AD4	D	101	112	Right-handed alpha
Helix 32	AD5	D	151	163	Right-handed alpha
Helix 33	AD6	D	180	199	Right-handed alpha
Helix 34	AD7	E	12	15	Right-handed 310
Helix 35	AD8	E	16	32	Right-handed alpha
Helix 36	AD9	E	44	46	Right-handed 310
Helix 37	AE1	E	52	59	Right-handed alpha
Helix 38	AE2	E	66	85	Right-handed alpha
Helix 39	AE3	E	101	112	Right-handed alpha
Helix 40	AE4	E	151	163	Right-handed alpha
Helix 41	AE5	E	175	179	Right-handed 310
Helix 42	AE6	E	180	199	Right-handed alpha
Helix 43	AE7	F	12	15	Right-handed 310
Helix 44	AE8	F	16	32	Right-handed alpha
Helix 45	AE9	F	44	46	Right-handed 310
Helix 46	AF1	F	52	60	Right-handed alpha
Helix 47	AF2	F	66	85	Right-handed alpha
Helix 48	AF3	F	101	112	Right-handed alpha
Helix 49	AF4	F	151	163	Right-handed alpha
Helix 50	AF5	F	180	199	Right-handed alpha
Helix 51	AF6	G	12	15	Right-handed 310
Helix 52	AF7	G	16	32	Right-handed alpha
Helix 53	AF8	G	44	46	Right-handed 310
Helix 54	AF9	G	52	60	Right-handed alpha
Helix 55	AG1	G	66	86	Right-handed alpha
Helix 56	AG2	G	101	112	Right-handed alpha
Helix 57	AG3	G	151	163	Right-handed alpha
Helix 58	AG4	G	179	199	Right-handed alpha
Helix 59	AG5	H	12	15	Right-handed 310
Helix 60	AG6	H	16	32	Right-handed alpha
Helix 61	AG7	H	44	46	Right-handed 310
Helix 62	AG8	H	52	60	Right-handed alpha
Helix 63	AG9	H	66	86	Right-handed alpha
Helix 64	AH1	H	101	112	Right-handed alpha
Helix 65	AH2	H	151	163	Right-handed alpha
Helix 66	AH3	H	180	199	Right-handed alpha

There are 16 sheets in PDB entry 8H4J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	42	first strand
Strand 2	A	3	8	parallel
Strand 3	A	88	92	parallel
Strand 4	A	133	139	parallel
Strand 5	A	168	173	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	126	127	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	42	first strand
Strand 2	B	3	8	parallel
Strand 3	B	88	92	parallel
Strand 4	B	133	139	parallel
Strand 5	B	168	173	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	B	126	127	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	42	first strand
Strand 2	C	3	8	parallel
Strand 3	C	88	92	parallel
Strand 4	C	133	139	parallel
Strand 5	C	168	173	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	119	first strand
Strand 2	C	126	127	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	42	first strand
Strand 2	D	3	8	parallel
Strand 3	D	88	92	parallel
Strand 4	D	133	139	parallel
Strand 5	D	168	173	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	119	first strand
Strand 2	D	126	127	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	42	first strand
Strand 2	E	3	8	parallel
Strand 3	E	88	92	parallel
Strand 4	E	133	139	parallel
Strand 5	E	168	173	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	E	126	127	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	42	first strand
Strand 2	F	3	8	parallel
Strand 3	F	88	92	parallel
Strand 4	F	133	139	parallel
Strand 5	F	168	173	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	119	first strand
Strand 2	F	126	127	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	42	first strand
Strand 2	G	3	8	parallel
Strand 3	G	88	92	parallel
Strand 4	G	133	139	parallel
Strand 5	G	168	173	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	118	119	first strand
Strand 2	G	126	127	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	37	42	first strand
Strand 2	H	3	8	parallel
Strand 3	H	88	92	parallel
Strand 4	H	133	139	parallel
Strand 5	H	168	173	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	118	119	first strand
Strand 2	H	126	127	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H4J

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H4J