Analysis of interatomic Contacts of Structural Units in PDB entry:
8H4O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H4O entry

There are 2 chains in PDB entry 8H4O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1GLU 414
B
 GLY -1ALA 415
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 8H4O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-1 12Right-handed alpha
Helix 2
AA2
A
13 14Right-handed 310
Helix 3
AA3
A
15 19Right-handed 310
Helix 4
AA4
A
22 35Right-handed alpha
Helix 5
AA5
A
37 55Right-handed alpha
Helix 6
AA6
A
65 67Right-handed 310
Helix 7
AA7
A
68 78Right-handed alpha
Helix 8
AA8
A
123 131Right-handed alpha
Helix 9
AA9
A
132 136Right-handed 310
Helix 10
AB1
A
148 161Right-handed alpha
Helix 11
AB2
A
171 183Right-handed alpha
Helix 12
AB3
A
188 208Right-handed alpha
Helix 13
AB4
A
226 238Right-handed alpha
Helix 14
AB5
A
239 241Right-handed 310
Helix 15
AB6
A
242 250Right-handed alpha
Helix 16
AB7
A
254 278Right-handed alpha
Helix 17
AB8
A
287 295Right-handed alpha
Helix 18
AB9
A
295 307Right-handed alpha
Helix 19
AC1
A
309 320Right-handed alpha
Helix 20
AC2
A
323 330Right-handed alpha
Helix 21
AC3
A
331 336Right-handed 310
Helix 22
AC4
A
344 361Right-handed alpha
Helix 23
AC5
A
367 392Right-handed alpha
Helix 24
AC6
A
393 403Right-handed alpha
Helix 25
AC7
B
0 13Right-handed alpha
Helix 26
AC8
B
14 19Right-handed 310
Helix 27
AC9
B
22 35Right-handed alpha
Helix 28
AD1
B
37 55Right-handed alpha
Helix 29
AD2
B
68 78Right-handed alpha
Helix 30
AD3
B
123 132Right-handed alpha
Helix 31
AD4
B
133 136Right-handed 310
Helix 32
AD5
B
148 162Right-handed alpha
Helix 33
AD6
B
171 183Right-handed alpha
Helix 34
AD7
B
188 203Right-handed alpha
Helix 35
AD8
B
226 238Right-handed alpha
Helix 36
AD9
B
239 250Right-handed alpha
Helix 37
AE1
B
254 277Right-handed alpha
Helix 38
AE2
B
287 295Right-handed alpha
Helix 39
AE3
B
295 307Right-handed alpha
Helix 40
AE4
B
309 320Right-handed alpha
Helix 41
AE5
B
323 331Right-handed alpha
Helix 42
AE6
B
332 336Right-handed 310
Helix 43
AE7
B
344 360Right-handed alpha
Helix 44
AE8
B
367 391Right-handed alpha
Helix 45
AE9
B
393 403Right-handed alpha
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There are 2 sheets in PDB entry 8H4O. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 102first strand
Strand 2
A
109 115anti-parallel
Strand 3
A
57 63parallel
Strand 4
A
138 143parallel
Strand 5
A
165 169parallel
Strand 6
A
214 216parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 102first strand
Strand 2
B
109 115anti-parallel
Strand 3
B
57 63parallel
Strand 4
B
138 143parallel
Strand 5
B
165 169parallel
Strand 6
B
214 216parallel
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