Analysis of interatomic Contacts of Structural Units in PDB entry:
8H4Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H4Q entry

There are 2 chains in PDB entry 8H4Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
N
 MET 1ARG 488
A
 PRO 3VAL 491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8H4Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
N
14 21Right-handed alpha
Helix 2
AA2
N
34 38Right-handed 310
Helix 3
AA3
N
40 43Right-handed 310
Helix 4
AA4
N
53 55Right-handed 310
Helix 5
AA5
N
61 73Right-handed alpha
Helix 6
AA6
N
87 100Right-handed alpha
Helix 7
AA7
N
115 125Right-handed alpha
Helix 8
AA8
N
145 157Right-handed alpha
Helix 9
AA9
N
169 178Right-handed alpha
Helix 10
AB1
N
178 187Right-handed alpha
Helix 11
AB2
N
200 214Right-handed alpha
Helix 12
AB3
N
235 240Right-handed alpha
Helix 13
AB4
N
246 250Right-handed 310
Helix 14
AB5
N
257 272Right-handed alpha
Helix 15
AB6
N
276 296Right-handed alpha
Helix 16
AB7
N
298 303Right-handed 310
Helix 17
AB8
N
319 321Right-handed 310
Helix 18
AB9
N
322 330Right-handed alpha
Helix 19
AC1
N
340 346Right-handed 310
Helix 20
AC2
N
352 354Right-handed 310
Helix 21
AC3
N
358 369Right-handed alpha
Helix 22
AC4
N
382 389Right-handed alpha
Helix 23
AC5
N
412 427Right-handed alpha
Helix 24
AC6
N
428 435Right-handed alpha
Helix 25
AC7
N
449 462Right-handed alpha
Helix 26
AC8
N
471 479Right-handed 310
Helix 27
AC9
N
480 487Right-handed alpha
Helix 28
AD1
A
14 21Right-handed alpha
Helix 29
AD2
A
34 38Right-handed 310
Helix 30
AD3
A
53 55Right-handed 310
Helix 31
AD4
A
61 73Right-handed alpha
Helix 32
AD5
A
87 102Right-handed alpha
Helix 33
AD6
A
115 125Right-handed alpha
Helix 34
AD7
A
145 154Right-handed alpha
Helix 35
AD8
A
169 178Right-handed alpha
Helix 36
AD9
A
178 187Right-handed alpha
Helix 37
AE1
A
200 214Right-handed alpha
Helix 38
AE2
A
235 240Right-handed alpha
Helix 39
AE3
A
245 249Right-handed 310
Helix 40
AE4
A
257 272Right-handed alpha
Helix 41
AE5
A
276 296Right-handed alpha
Helix 42
AE6
A
298 303Right-handed 310
Helix 43
AE7
A
319 321Right-handed 310
Helix 44
AE8
A
322 330Right-handed alpha
Helix 45
AE9
A
331 335Right-handed 310
Helix 46
AF1
A
340 345Right-handed 310
Helix 47
AF2
A
352 354Right-handed 310
Helix 48
AF3
A
358 365Right-handed alpha
Helix 49
AF4
A
382 389Right-handed alpha
Helix 50
AF5
A
412 427Right-handed alpha
Helix 51
AF6
A
428 435Right-handed alpha
Helix 52
AF7
A
449 461Right-handed alpha
Helix 53
AF8
A
471 480Right-handed alpha
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There are 6 sheets in PDB entry 8H4Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
30 32first strand
Strand 2
N
45 51anti-parallel
Strand 3
N
309 315parallel
Strand 4
N
190 196parallel
Strand 5
N
218 224parallel
Strand 6
N
252 256parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
128 132first strand
Strand 2
N
106 111parallel
Strand 3
N
80 84parallel
Strand 4
N
160 161parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
356 357first strand
Strand 2
N
465 469parallel
Strand 3
N
441 445parallel
Strand 4
N
375 379parallel
Strand 5
N
395 396parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
45 51anti-parallel
Strand 3
A
309 315parallel
Strand 4
A
190 196parallel
Strand 5
A
218 224parallel
Strand 6
A
252 256parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 132first strand
Strand 2
A
105 111parallel
Strand 3
A
80 84parallel
Strand 4
A
160 161parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 357first strand
Strand 2
A
466 469parallel
Strand 3
A
441 445parallel
Strand 4
A
375 379parallel
Strand 5
A
395 396parallel
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