Analysis of interatomic Contacts of Structural Units in PDB entry:
8H52


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H52 entry

There is 1 chain in PDB entry 8H52 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 2ARG 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8H52. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
36 51Right-handed alpha
Helix 3
AA3
A
64 76Right-handed alpha
Helix 4
AA4
A
85 87Right-handed 310
Helix 5
AA5
A
88 99Right-handed alpha
Helix 6
AA6
A
119 124Right-handed alpha
Helix 7
AA7
A
125 132Right-handed alpha
Helix 8
AA8
A
145 158Right-handed alpha
Helix 9
AA9
A
184 193Right-handed alpha
Helix 10
AB1
A
231 241Right-handed alpha
Helix 11
AB2
A
254 268Right-handed alpha
Helix 12
AB3
A
283 292Right-handed alpha
Helix 13
AB4
A
294 302Right-handed 310
Helix 14
AB5
A
331 339Right-handed alpha
Helix 15
AB6
A
341 360Right-handed alpha
Helix 16
AB7
A
376 378Right-handed 310
Helix 17
AB8
A
380 390Right-handed alpha
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There are 4 sheets in PDB entry 8H52. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
29 33parallel
Strand 3
A
3 7parallel
Strand 4
A
79 82parallel
Strand 5
A
102 105parallel
Strand 6
A
135 138parallel
Strand 7
A
371 374parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 206first strand
Strand 2
A
197 200anti-parallel
Strand 3
A
246 252anti-parallel
Strand 4
A
222 229anti-parallel
Strand 5
A
213 218anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 206first strand
Strand 2
A
197 200anti-parallel
Strand 3
A
246 252anti-parallel
Strand 4
A
161 171parallel
Strand 5
A
305 315anti-parallel
Strand 6
A
320 330anti-parallel
Strand 7
A
395 399anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 277first strand
Strand 2
A
280 282anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il